Estimation of the relative abundance of species in artificial mixtures of insects using low-coverage shotgun metagenomics

Lidia Garrido-Sanz; Miquel Àngel Senar; Josep Piñol

doi:10.3897/mbmg.4.48281

Research Article

Metabarcoding and Metagenomics 4: e48281
https://doi.org/10.3897/mbmg.4.48281 (07 Feb 2020)

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Josep Piñol (2021)
Genotype by sequencing: An alternative new method to amplicon metabarcoding and shotgun metagenomics for the assessment of eukaryote biodiversity. Molecular Ecology Resources 21: 1001.

DOI: 10.1111/1755-0998.13320

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Drastic reduction of false positive species in samples of insects by intersecting the default output of two popular metagenomic classifiers. PLOS ONE 17: e0275790.

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msGBS: A new high‐throughput approach to quantify the relative species abundance in root samples of multispecies plant communities. Molecular Ecology Resources 21: 1021.

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Reconstructing the ecosystem context of a species: Honey-borne DNA reveals the roles of the honeybee. PLOS ONE 17: e0268250.

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Wiebke Sickel, Vera Zizka, Alice Scherges, Sarah J. Bourlat, Petra Dieker (2023)
Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods. Metabarcoding and Metagenomics 7: .

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An Accessible Metagenomic Strategy Allows for Better Characterisation of Invertebrate Bulk Samples. Molecular Ecology Resources : .

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Karen L. Bell, Robert A. Petit, Anya Cutler, Emily K. Dobbs, J. Michael Macpherson, Timothy D. Read, Kevin S. Burgess, Berry J. Brosi (2021)
Comparing whole‐genome shotgun sequencing and DNA metabarcoding approaches for species identification and quantification of pollen species mixtures. Ecology and Evolution 11: 16082.

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Andrew G. Briscoe, Sarah Nichols, Hanna Hartikainen, Hazel Knipe, Rachel Foster, Andy J. Green, Beth Okamura, David Bass (2022)
High‐throughput sequencing of faeces provides evidence for dispersal of parasites and pathogens by migratory waterbirds. Molecular Ecology Resources 22: 1303.

DOI: 10.1111/1755-0998.13548

Kamila Zdeňková, Eliška Čermáková, Pavel Vejl, Agáta Čermáková, Jakub Vašek (2025)
Analytical Methods for the Identification of Edible and Feed Insects: Focus on DNA-Based Techniques. Foods 14: 2002.

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Lidia Garrido‐Sanz, Miquel Àngel Senar, Josep Piñol (2022)
Relative species abundance estimation in artificial mixtures of insects using mito‐metagenomics and a correction factor for the mitochondrial DNA copy number. Molecular Ecology Resources 22: 153.

DOI: 10.1111/1755-0998.13464

Marie‐Ève Monchamp, David A. Walsh, Rebecca E. Garner, Susanne A. Kraemer, Beatrix E. Beisner, Melania E. Cristescu, Irene Gregory‐Eaves (2022)
Comparative analysis of zooplankton diversity in freshwaters: What can we gain from metagenomic analysis?. Environmental DNA 4: 1250.

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Saeed Mohamadzade Namin, Minwoong Son, Chuleui Jung (2022)
Current methodologies in construction of plant-pollinator network with emphasize on the application of DNA metabarcoding approach. Journal of Ecology and Environment 46: .

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Mengdi Hao, Qian Jin, Guanliang Meng, Caiqing Yang, Shenzhou Yang, Zhiyong Shi, Min Tang, Shanlin Liu, Yinan Li, Jing Li, Dan Zhang, Xu Su, Chungkun Shih, Yiran Sun, John-James Wilson, Xin Zhou, Aibing Zhang (2020)
Using full-length metabarcoding and DNA barcoding to infer community assembly for speciose taxonomic groups: a case study. Evolutionary Ecology 34: 1063.

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Yeonhwa Jo, Chang-Gi Back, Hoseong Choi, Won Kyong Cho (2020)
Comparative Microbiome Study of Mummified Peach Fruits by Metagenomics and Metatranscriptomics. Plants 9: 1052.

DOI: 10.3390/plants9081052

Iliana B. Baums, Valérie F. Chamberland, Nicolas S. Locatelli, Trinity Conn (2022)
Coral Reef Conservation and Restoration in the Omics Age. Chapter 3: 35.

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Kyleen E. Elwick, Natalie Damaso, James M. Robertson (2024)
DNA Barcoding. Chapter 9: 155.

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