Metabarcoding and Metagenomics 8

Research Article

Simple approaches for evaluation of OTU quality based on dissimilarity arrays

Marie-Josée Cros, Jean-Marc Frigerio, Nathalie Peyrard, Alain Franc

10.3897/mbmg.8.108649

14-03-2024

Unique: 1038 | Total: 2621

Reprint: € 8,00

Research Article

Nanopore duplex sequencing as an alternative to Illumina MiSeq sequencing for eDNA-based biomonitoring of coastal aquaculture impacts

Thorsten Stoeck, Sven Nicolai Katzenmeier, Hans-Werner Breiner, Verena Rubel

10.3897/mbmg.8.121817

29-05-2024

Unique: 2737 | Total: 4672

Reprint: € 9,00

Part of: Towards standardized molecular biodiversity monitoring

Research Article

Net type, tow duration and day/night sampling effects on the composition of marine zooplankton derived from metabarcoding

Ashrenee Govender, Sandi Willows-Munro, Sohana P. Singh, Johan C. Groeneveld

10.3897/mbmg.8.119614

21-06-2024

Unique: 996 | Total: 1435

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Research Article

Improving understanding of nematode communities in agricultural settings: a comparison of mitometagenomics and morphology

Eli M. S. Gendron, Clemen J. Oliveira, Johan Desaeger, Dorota L. Porazinska

10.3897/mbmg.8.123387

23-07-2024

Unique: 1116 | Total: 2267

Reprint: € 13,00

Research Article

Optimising species detection probability and sampling effort in lake fish eDNA surveys

10.3897/mbmg.8.104655

24-07-2024

Unique: 1401 | Total: 2850

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Research Article

Optimising eDNA analysis for urban otter monitoring: seasonal patterns, detection strategies and prey availability

Yujin Kang, Seungwoo Han, Youngkeun Song

10.3897/mbmg.8.115512

20-08-2024

Unique: 1140 | Total: 2426

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Part of: Towards standardized molecular biodiversity monitoring

Research Article

Influence of storage time on the stability of diatom assemblages using DNA from riverine biofilm samples

Jonathan Warren, Sean Butler, Nick Evens, Laura Hunt, Martyn Kelly, Lindsay Newbold, Daniel S. Read, Joe D. Taylor, Kerry Walsh

10.3897/mbmg.8.129227

22-08-2024

Unique: 1041 | Total: 1474

Reprint: € 8,00

Methods

Hidden in the blow - a matrix to characterise cetaceans’ respiratory microbiome: short-finned pilot whale as case study

10.3897/mbmg.8.121060

28-08-2024

Unique: 1039 | Total: 2293

Reprint: € 9,00

Research Article

Impact of a coastal protection measure on sandy-beach meiofauna at Ahrenshoop (Baltic Sea, Germany): results from metabarcoding and morphological approaches are similar

Iryna Kapshyna, Gritta Veit-Köhler, Leon Hoffman, Sahar Khodami

10.3897/mbmg.8.127688

10-09-2024

Unique: 997 | Total: 2052

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Research Article

Autonomous samplers and environmental DNA metabarcoding: sampling day and primer choice have greatest impact on fish detection probabilities

10.3897/mbmg.8.122375

13-09-2024

Unique: 1132 | Total: 2371

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Part of: Towards standardized molecular biodiversity monitoring

Research Article

Centering accessibility, increasing capacity, and fostering innovation in the development of international eDNA standards

10.3897/mbmg.8.126058

24-09-2024

Unique: 1609 | Total: 2420

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Part of: Towards standardized molecular biodiversity monitoring

Software Description

The ASV Registry: a place for ASVs to be

Christian Bräunig, Sandra Meid, Björn Quast, Vera Rduch, Peter Grobe

10.3897/mbmg.8.124564

04-10-2024

Unique: 963 | Total: 1452

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Part of: Towards standardized molecular biodiversity monitoring

Research Article

Benchmarking the discrimination power of commonly used markers and amplicons in marine fish (e)DNA (meta)barcoding

João T. Fontes, Kazutaka Katoh, Rui Pires, Pedro Soares, Filipe O. Costa

10.3897/mbmg.8.128646

04-10-2024

Unique: 1153 | Total: 1810

Reprint: € 11,00

Part of: Towards standardized molecular biodiversity monitoring

Research Article

A morphological and high throughput sequencing workflow to identify Australian ants (Hymenoptera, Formicidae): a new tool for biosecurity and biodiversity

Francesco Martoni, James Buxton, Kathryn S. Sparks, Tongda Li, Reannon L. Smith, Lea Rako, Mark J. Blacket

10.3897/mbmg.8.130531

21-10-2024

Unique: 1030 | Total: 1475

Reprint: € 14,00

Part of: Towards standardized molecular biodiversity monitoring

Emerging Technique

NAMERS: a purpose-built reference DNA sequence database to support applied eDNA metabarcoding

Kristen M. Westfall, Gregory A. C. Singer, Muneesh Kaushal, Scott R. Gilmore, Nicole Fahner, Mehrdad Hajibabaei, Cathryn L. Abbott

10.3897/mbmg.8.125095

19-11-2024

Unique: 933 | Total: 1346

Reprint: € 9,00

Research Article

Application of a dual-locus metabarcoding approach for a more comprehensive account of cattle dietary items in a semi-arid African savanna with special reference to forbs

10.3897/mbmg.8.127959

22-11-2024

Unique: 651 | Total: 1454

Reprint: € 12,00

Research Article

Comparison of the biodiversity of epiphytic diatoms in the Euphrates-Tigris rivers using morphological and metabarcoding analyses

Heba Mohamad, Katherina Schimani, Maitham Al-Shaheen, Nélida Abarca, Regine Jahn, Adil Al-Handal, Wolf-Henning Kusber, Jonas Zimmermann

10.3897/mbmg.8.135082

13-12-2024

Unique: 572 | Total: 1225

Reprint: € 15,00

Part of: Towards standardized molecular biodiversity monitoring

Research Article

Homogenization of insect bulk samples yields more comprehensive yet comparable biodiversity data than non-destructive lysis

Lisa Wolany, Julian Enss, Florian Leese, Dominik Buchner

10.3897/mbmg.8.129814

20-12-2024

Unique: 704 | Total: 1004

Reprint: € 7,00

Research Article

Assessing the impact of tidal changes on fish environmental DNA metabarcoding in temperate and tropical coastal regions of Japan

Shin-ichiro Oka, Tetsuya Sado, Masayuki Ushio, Masaki Miya

10.3897/mbmg.8.135461

20-12-2024

Unique: 759 | Total: 1463

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Part of: Towards standardized molecular biodiversity monitoring

Forum Paper

2024 Editors' Choice

The MIEM guidelines: Minimum information for reporting of environmental metabarcoding data

10.3897/mbmg.8.128689

30-12-2024

Unique: 1934 | Total: 3112

Reprint: € 12,00