Metabarcoding and Metagenomics 7

Research Article

Can the Eurasian otter (Lutra lutra) be used as an effective sampler of fish diversity? Using molecular assessment of otter diet to survey fish communities

Hailong Dou, Mi Wang, Xuwang Yin, Limin Feng, Haitao Yang

10.3897/mbmg.7.96733

21-02-2023

Unique: 3120 | Total: 5589

Reprint: € 8,00

Research Article

Maximizing the reliability and the number of species assignments in metabarcoding studies using a curated regional library and a public repository

Audrey Bourret, Claude Nozères, Eric Parent, Geneviève J. Parent

10.3897/mbmg.7.98539

23-02-2023

Unique: 2869 | Total: 5066

Reprint: € 7,00

Research Article

Development of two new sets of PCR primers for eDNA metabarcoding of brittle stars (Echinodermata, Ophiuroidea)

Masanori Okanishi, Hisanori Kohtsuka, Qianqian Wu, Junpei Shinji, Naoki Shibata, Takashi Tamada, Tomoyuki Nakano, Toshifumi Minamoto

10.3897/mbmg.7.94298

28-02-2023

Unique: 3455 | Total: 6077

Reprint: € 9,00

Research Article

Does phylogeny explain bias in quantitative DNA metabarcoding?

Mingxin Liu, Christopher P. Burridge, Laurence J. Clarke, Susan C. Baker, Gregory J. Jordan

10.3897/mbmg.7.101266

13-06-2023

Unique: 2160 | Total: 3321

Reprint: € 7,00

Research Article

2023 Editors' Choice

Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts

Andreas Kolter, Martin Husemann, Lars Podsiadlowski, Birgit Gemeinholzer

10.3897/mbmg.7.86883

05-07-2023

Unique: 2487 | Total: 3700

Reprint: € 12,00

Data Paper

DNA metabarcoding data from faecal samples of the lesser (Myotis blythii) and the greater (Myotis myotis) mouse-eared bats from Bulgaria

Antoniya Hubancheva, Vedran Bozicevic, Jérôme Morinière, Holger R. Goerlitz

10.3897/mbmg.7.106844

25-07-2023

Unique: 2197 | Total: 3122

Reprint: € 7,00

Research Article

Direct PCR meets high-throughput sequencing – metabarcoding of chironomid communities without DNA extraction

Nina Röder, Klaus Schwenk

10.3897/mbmg.7.102455

25-07-2023

Unique: 2108 | Total: 3564

Reprint: € 8,00

Research Article

Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys

10.3897/mbmg.7.99979

09-08-2023

Unique: 2677 | Total: 4168

Reprint: € 14,00

Research Article

Unravelling bird nest arthropod community structure using metabarcoding

Valerie Levesque-Beaudin, Dirk Steinke, Mieke Böcker, Bettina Thalinger

10.3897/mbmg.7.103279

05-09-2023

Unique: 1796 | Total: 3270

Reprint: € 9,00

Primer Validation

Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities

Till-Hendrik Macher, Robin Schütz, Atakan Yildiz, Arne J. Beermann, Florian Leese

10.3897/mbmg.7.103856

05-09-2023

Unique: 5141 | Total: 7989

Reprint: € 12,00

Applied Study

Fish diversity assessed by eDNA detection methods in the Rioni River

Tamar Beridze, Bella Japoshvili, Tamar Edisherashvili, Cort Anderson, Levan Mumladze

10.3897/mbmg.7.96780

18-10-2023

Unique: 2299 | Total: 3453

Reprint: € 7,00

Software Description

Natrix2 – Improved amplicon workflow with novel Oxford Nanopore Technologies support and enhancements in clustering, classification and taxonomic databases

Aman Deep, Dana Bludau, Marius Welzel, Sandra Clemens, Dominik Heider, Jens Boenigk, Daniela Beisser

10.3897/mbmg.7.109389

24-10-2023

Unique: 3817 | Total: 6105

Reprint: € 6,00

Research Article

Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of Rhipicephalus sanguineus sensu lato (s.l.) ticks in Colombia

Luisa Paez-Triana, Giovanny Herrera, Laura Vega, Diego García-Corredor, Martin Orlando Pulido Medellín, Alberto Paniz-Mondolfi, Marina Muñoz, Juan David Ramírez

10.3897/mbmg.7.109085

20-11-2023

Unique: 2663 | Total: 4111

Reprint: € 12,00

Review Article

Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods

Wiebke Sickel, Vera Zizka, Alice Scherges, Sarah J. Bourlat, Petra Dieker

10.3897/mbmg.7.112290

23-11-2023

Unique: 3571 | Total: 6181

Reprint: € 13,00

Research Article

Exploring benthic diatom diversity in the West Antarctic Peninsula: insights from a morphological and molecular approach

Katherina Schimani, Nélida Abarca, Oliver Skibbe, Heba Mohamad, Regine Jahn, Wolf-Henning Kusber, Gabriela Laura Campana, Jonas Zimmermann

10.3897/mbmg.7.110194

04-12-2023

Unique: 1963 | Total: 2945

Reprint: € 17,00

Research Article

Insights into the ecological impact of trout introduction in an oligotrophic lake using sedimentary environmental DNA

Lena A. Schallenberg, Georgia Thomson-Laing, David Kelly, John K. Pearman, Jamie D. Howarth, Marcus J. Vandergoes, Jonathan Puddick, Sean Fitzsimons, Andrew Rees, Susanna A. Wood

10.3897/mbmg.7.111467

07-12-2023

Unique: 1792 | Total: 3610

Reprint: € 11,00

Research Article

Halamphora taxa in Hungarian soda pans and shallow soda lakes detected via metabarcoding and microscopic analyses

Éva Ács, Tibor Bíró, Emil Boros, Péter Dobosy, Mónika Duleba, Angéla Földi, Keve T. Kiss, Zlatko Levkov, Péter Orgoványi, Orsolya Pálné Szén, Zsuzsa Trábert, Edit Vadkerti, István Grigorszky

10.3897/mbmg.7.111679

13-12-2023

Unique: 1687 | Total: 3721

Reprint: € 11,00