Metabarcoding and Metagenomics 5

Methods

Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life

10.3897/mbmg.5.58056

26-02-2021

Unique: 5697 | Total: 9308

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Research Article

Metabarcoding of environmental samples suggest wide distribution of eelgrass (Zostera marina) pathogens in the north Pacific

Damian M. Menning, Hunter A. Gravley, Melissa N. Cady, Daniel Pepin, Sandy Wyllie-Echeverria, David H. Ward, Sandra L. Talbot

10.3897/mbmg.5.62823

09-04-2021

Unique: 2843 | Total: 4659

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Research Article

Effects of Malaise trap spacing on species richness and composition of terrestrial arthropod bulk samples

Dirk Steinke, Thomas WA Braukmann, Laura Manerus, Allan Woodhouse, Vasco Elbrecht

10.3897/mbmg.5.59201

09-04-2021

Unique: 4522 | Total: 7400

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Part of: Advances in DNA and eDNA-based biomonitoring: Field & lab methods

Methods

Potential for cross-contamination of diatom DNA samples when using toothbrushes

Martyn G. Kelly, Tim Jones, Kerry Walsh

10.3897/mbmg.5.66503

17-05-2021

Unique: 2344 | Total: 3841

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Part of: DNA and eDNA methods for bioassessment and monitoring: Steps towards formal implementation

Research Article

Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species

Till-Hendrik Macher, Robin Schütz, Jens Arle, Arne J. Beermann, Jan Koschorreck, Florian Leese

10.3897/mbmg.5.66557

13-07-2021

Unique: 7921 | Total: 11051

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Part of: Advances in DNA and eDNA-based biomonitoring: Field & lab methods

Methods

Wet grinding of invertebrate bulk samples – a scalable and cost-efficient protocol for metabarcoding and metagenomics

Dominik Buchner, Peter Haase, Florian Leese

10.3897/mbmg.5.67533

20-07-2021

Unique: 3867 | Total: 6436

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Research Article

Evaluating the performance of DNA metabarcoding for assessment of zooplankton communities in Western Lake Superior using multiple markers

Christy Meredith, Joel Hoffman, Anett Trebitz, Erik Pilgrim, Sarah Okum, John Martinson, Ellen S. Cameron

10.3897/mbmg.5.64735

21-07-2021

Unique: 3715 | Total: 6264

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Research Article

The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities?

Jarno Turunen, Heikki Mykrä, Vasco Elbrecht, Dirk Steinke, Thomas Braukmann, Jukka Aroviita

10.3897/mbmg.5.68938

28-07-2021

Unique: 3813 | Total: 6296

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Part of: DNA and eDNA methods for bioassessment and monitoring: Steps towards formal implementation

Research Article

How can integrated morphotaxonomy- and metabarcoding-based diatom assemblage analyses best contribute to the ecological assessment of streams?

Panayiota Pissaridou, Marco Cantonati, Agnes Bouchez, Iakovos Tziortzis, Gerald Dörflinger, Marlen I. Vasquez

10.3897/mbmg.5.68438

25-08-2021

Unique: 3009 | Total: 4886

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Data Paper

Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data

Ľubomír Rajter, Micah Dunthorn

10.3897/mbmg.5.69602

30-08-2021

Unique: 3339 | Total: 5603

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Primer Validation

Internal transcribed spacer primer evaluation for vascular plant metabarcoding

Andreas Kolter, Birgit Gemeinholzer

10.3897/mbmg.5.68155

02-09-2021

Unique: 5274 | Total: 8794

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Part of: Advances in DNA and eDNA-based biomonitoring: Field & lab methods

Data Paper

18S rRNA amplicon sequence data (V1–V3) of the Bronx river estuary, New York

Melissa R. Ingala, Irena E. Werner, Allison M. Fitzgerald, Eugenia Naro-Maciel

10.3897/mbmg.5.69691

07-09-2021

Unique: 3230 | Total: 4984

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Software Description

The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data

Haris Zafeiropoulos, Laura Gargan, Sanni Hintikka, Christina Pavloudi, Jens Carlsson

10.3897/mbmg.5.69657

03-11-2021

Unique: 3355 | Total: 5424

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Research Article

Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study

Sirje Sildever, Peeter Laas, Natalja Kolesova, Inga Lips, Urmas Lips, Satoshi Nagai

10.3897/mbmg.5.72371

03-11-2021

Unique: 4674 | Total: 7994

Reprint: € 9,00

Software Description

Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations

Alexis Canino, Agnès Bouchez, Christophe Laplace-Treyture, Isabelle Domaizon, Frédéric Rimet

10.3897/mbmg.5.74096

15-12-2021

Unique: 2862 | Total: 4636

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Part of: DNA barcode reference libraries for aquatic bioassessment and monitoring

Data Paper

Revision and annotation of DNA barcode records for marine invertebrates: report of the 8^th iBOL conference hackathon

Adriana E. Radulovici, Pedro E. Vieira, Sofia Duarte, Marcos A. L. Teixeira, Luisa M. S. Borges, Bruce E. Deagle, Sanna Majaneva, Niamh Redmond, Jessica A. Schultz, Filipe O. Costa

10.3897/mbmg.5.67862

16-12-2021

Unique: 3289 | Total: 5351

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Research Article

Using DNA metabarcoding to decipher the diet plant component of mammals from the Eastern Mediterranean region

Liliane Boukhdoud, Carole Saliba, Lillian D. Parker, Nancy Rotzel McInerney, Rhea Kahale, Issam Saliba, Jesús E. Maldonado, Magda Bou Dagher Kharrat

10.3897/mbmg.5.70107

20-12-2021

Unique: 4610 | Total: 7283

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Part of: Advances in DNA and eDNA-based biomonitoring: Field & lab methods

Research Article

Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection

Laure Van den Bulcke, Annelies De Backer, Bart Ampe, Sara Maes, Jan Wittoeck, Willem Waegeman, Kris Hostens, Sofie Derycke

10.3897/mbmg.5.71107

29-12-2021

Unique: 3613 | Total: 6321

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Methods

Comparing species detection success between molecular markers in DNA metabarcoding of coastal macroinvertebrates

Barbara R. Leite, Pedro E. Vieira, Jesús S. Troncoso, Filipe O. Costa

10.3897/mbmg.5.70063

29-12-2021

Unique: 4308 | Total: 7120

Reprint: € 6,00