Metabarcoding and Metagenomics 5

Part of: Advances in DNA and eDNA-based biomonitoring: Field & lab methods

Research Article

Towards harmonization of DNA metabarcoding for monitoring marine macrobenthos: the effect of technical replicates and pooled DNA extractions on species detection

Laure Van den Bulcke, Annelies De Backer, Bart Ampe, Sara Maes, Jan Wittoeck, Willem Waegeman, Kris Hostens, Sofie Derycke

10.3897/mbmg.5.71107

29-12-2021

Unique: 4379 | Total: 7290

Reprint: € 7,00

Research Article

Using DNA metabarcoding to decipher the diet plant component of mammals from the Eastern Mediterranean region

Liliane Boukhdoud, Carole Saliba, Lillian D. Parker, Nancy Rotzel McInerney, Rhea Kahale, Issam Saliba, Jesús E. Maldonado, Magda Bou Dagher Kharrat

10.3897/mbmg.5.70107

20-12-2021

Unique: 5462 | Total: 8345

Reprint: € 7,00

Part of: DNA barcode reference libraries for aquatic bioassessment and monitoring

Data Paper

Revision and annotation of DNA barcode records for marine invertebrates: report of the 8^th iBOL conference hackathon

Adriana E. Radulovici, Pedro E. Vieira, Sofia Duarte, Marcos A. L. Teixeira, Luisa M. S. Borges, Bruce E. Deagle, Sanna Majaneva, Niamh Redmond, Jessica A. Schultz, Filipe O. Costa

10.3897/mbmg.5.67862

16-12-2021

Unique: 4009 | Total: 6238

Reprint: € 6,00

Software Description

Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations

Alexis Canino, Agnès Bouchez, Christophe Laplace-Treyture, Isabelle Domaizon, Frédéric Rimet

10.3897/mbmg.5.74096

15-12-2021

Unique: 3459 | Total: 5356

Reprint: € 5,00

Research Article

Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study

Sirje Sildever, Peeter Laas, Natalja Kolesova, Inga Lips, Urmas Lips, Satoshi Nagai

10.3897/mbmg.5.72371

03-11-2021

Unique: 5623 | Total: 10187

Reprint: € 9,00

Software Description

The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data

Haris Zafeiropoulos, Laura Gargan, Sanni Hintikka, Christina Pavloudi, Jens Carlsson

10.3897/mbmg.5.69657

03-11-2021

Unique: 4314 | Total: 6736

Reprint: € 6,00

Part of: Advances in DNA and eDNA-based biomonitoring: Field & lab methods

Data Paper

18S rRNA amplicon sequence data (V1–V3) of the Bronx river estuary, New York

Melissa R. Ingala, Irena E. Werner, Allison M. Fitzgerald, Eugenia Naro-Maciel

10.3897/mbmg.5.69691

07-09-2021

Unique: 3808 | Total: 5687

Reprint: € 6,00

Primer Validation

Internal transcribed spacer primer evaluation for vascular plant metabarcoding

Andreas Kolter, Birgit Gemeinholzer

10.3897/mbmg.5.68155

02-09-2021

Unique: 6331 | Total: 10254

Reprint: € 8,00

Data Paper

Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data

Ľubomír Rajter, Micah Dunthorn

10.3897/mbmg.5.69602

30-08-2021

Unique: 4150 | Total: 6617

Reprint: € 6,00

Part of: DNA and eDNA methods for bioassessment and monitoring: Steps towards formal implementation

Research Article

How can integrated morphotaxonomy- and metabarcoding-based diatom assemblage analyses best contribute to the ecological assessment of streams?

Panayiota Pissaridou, Marco Cantonati, Agnes Bouchez, Iakovos Tziortzis, Gerald Dörflinger, Marlen I. Vasquez

10.3897/mbmg.5.68438

25-08-2021

Unique: 3651 | Total: 5780

Reprint: € 6,00

Research Article

The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities?

Jarno Turunen, Heikki Mykrä, Vasco Elbrecht, Dirk Steinke, Thomas Braukmann, Jukka Aroviita

10.3897/mbmg.5.68938

28-07-2021

Unique: 4469 | Total: 7100

Reprint: € 6,00