Metabarcoding and Metagenomics 2

Applied Study

Using DNA metabarcoding for assessing chironomid diversity and community change in mosquito controlled temporary wetlands

Kathrin Theissinger, Anna Kästel, Vasco Elbrecht, Jenny Makkonen, Susanne Michiels, Susanne Schmidt, Stefanie Allgeier, Florian Leese, Carsten Brühl

10.3897/mbmg.2.21060

15-01-2018

Unique: 5209 | Total: 9378

Reprint: € 7,00

Research Article

Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces

Timothy Lee, Yohannes Alemseged, Andrew Mitchell

10.3897/mbmg.2.22467

14-03-2018

Unique: 5026 | Total: 14445

Reprint: € 8,00

Research Article

Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing

Masayuki Ushio, Hiroaki Murakami, Reiji Masuda, Tetsuya Sado, Masaki Miya, Sho Sakurai, Hiroki Yamanaka, Toshifumi Minamoto, Michio Kondoh

10.3897/mbmg.2.23297

14-03-2018

Unique: 9255 | Total: 17497

Reprint: € 7,00

Research Article

Estimating fish alpha- and beta-diversity along a small stream with environmental DNA metabarcoding

Yiyuan Li, Nathan T. Evans, Mark A. Renshaw, Christopher L. Jerde, Brett P. Olds, Arial J. Shogren, Kristy Deiner, David M. Lodge, Gary A. Lamberti, Michael E. Pfrender

10.3897/mbmg.2.24262

14-05-2018

Unique: 7303 | Total: 13067

Reprint: € 6,00

Research Article

Characterising planktonic dinoflagellate diversity in Singapore using DNA metabarcoding

Yue Sze, Lilibeth N. Miranda, Tsai Min Sin, Danwei Huang

10.3897/mbmg.2.25136

17-05-2018

Unique: 4736 | Total: 7704

Reprint: € 7,00

Methods

Mu-DNA: a modular universal DNA extraction method adaptable for a wide range of sample types

Graham S. Sellers, Cristina Di Muri, Africa Gómez, Bernd Hänfling

10.3897/mbmg.2.24556

05-07-2018

Unique: 12098 | Total: 20465

Reprint: € 6,00

R Package

BBI: an R package for the computation of Benthic Biotic Indices from composition data

Tristan Cordier, Jan Pawlowski

10.3897/mbmg.2.25649

05-07-2018

Unique: 6206 | Total: 43632

Reprint: € 3,00

Methods

A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy

Alexander M. Weigand, Jan-Niklas Macher

10.3897/mbmg.2.26869

23-08-2018

Unique: 6727 | Total: 13131

Reprint: € 7,00

Research Article

Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples

Markus Majaneva, Ola H. Diserud, Shannon H.C. Eagle, Mehrdad Hajibabaei, Torbjørn Ekrem

10.3897/mbmg.2.26664

23-08-2018

Unique: 8434 | Total: 14117

Reprint: € 6,00

Research Article

A meta-barcoding census of freshwater planktonic protists in Appalachia – Natural Tunnel State Park, Virginia, USA

A. Bruce Cahoon, Ashley G. Huffman, Megan M. Krager, Roseanna M. Crowell

10.3897/mbmg.2.26939

10-10-2018

Unique: 4518 | Total: 7294

Reprint: € 6,00

Research Article

The influence of macroinvertebrate abundance on the assessment of freshwater quality in The Netherlands

Kevin K. Beentjes, Arjen G. C. L. Speksnijder, Menno Schilthuizen, Bartholomeus E.M. Schaub, Berry B. van der Hoorn

10.3897/mbmg.2.26744

12-10-2018

Unique: 4985 | Total: 8233

Reprint: € 5,00

Research Article

Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method

10.3897/mbmg.2.28963

02-11-2018

Unique: 6726 | Total: 11525

Reprint: € 7,00

Research Article

Monitoring riverine fish communities through eDNA metabarcoding: determining optimal sampling strategies along an altitudinal and biodiversity gradient

Jonas Bylemans, Dianne M. Gleeson, Mark Lintermans, Christopher M. Hardy, Matthew Beitzel, Dean M. Gilligan, Elise M. Furlan

10.3897/mbmg.2.30457

31-12-2018

Unique: 6663 | Total: 12233

Reprint: € 6,00