Metabarcoding and Metagenomics 6

Research Article

Environmental DNA (eDNA) metabarcoding surveys show evidence of non-indigenous freshwater species invasion to new parts of Eastern Europe

Gert-Jan Jeunen, Tatsiana Lipinskaya, Helen Gajduchenko, Viktoriya Golovenchik, Michail Moroz, Viktor Rizevsky, Vitaliy Semenchenko, Neil J. Gemmell

10.3897/mbmg.6.e68575

10-06-2022

Unique: 4567 | Total: 6938

Reprint: € 7,00

Data Paper

COI amplicon sequence data of environmental DNA collected from the Bronx River Estuary, New York City

Eugenia Naro-Maciel, Melissa R. Ingala, Irena E. Werner, Brendan N. Reid, Allison M. Fitzgerald

10.3897/mbmg.6.80139

10-06-2022

Unique: 3764 | Total: 5255

Reprint: € 6,00

Research Article

The bacterial hitchhiker’s guide to COI: Universal primer-based COI capture probes fail to exclude bacterial DNA, but 16S capture leaves metazoa behind

Sanni Hintikka, Jeanette E.L. Carlsson, Jens Carlsson

10.3897/mbmg.6.80416

31-05-2022

Unique: 4410 | Total: 6190

Reprint: € 7,00

Case Study

The use of citizen science in fish eDNA metabarcoding for evaluating regional biodiversity in a coastal marine region: A pilot study

Masaki Miya, Tetsuya Sado, Shin-ichiro Oka, Takehiko Fukuchi

10.3897/mbmg.6.80444

23-05-2022

Unique: 7802 | Total: 16215

Reprint: € 6,00

Research Article

A triad of kicknet sampling, eDNA metabarcoding, and predictive modeling to assess richness of mayflies, stoneflies and caddisflies in rivers

François Keck, Samuel Hürlemann, Nadine Locher, Christian Stamm, Kristy Deiner, Florian Altermatt

10.3897/mbmg.6.79351

10-05-2022

Unique: 3944 | Total: 5866

Reprint: € 7,00

Research Article

Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters

John K. Pearman, Laura Casas, Craig Michell, Naroa Aldanondo, Nazia Mojib, Karie Holtermann, Ioannis Georgakakis, Joao Curdia, Susana Carvalho, Amr Gusti, Xabier Irigoien

10.3897/mbmg.6.79208

12-04-2022

Unique: 3452 | Total: 4879

Reprint: € 7,00

Data Paper

18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific

Brendan N. Reid, Jennifer A. Servis, Molly Timmers, Forest Rohwer, Eugenia Naro-Maciel

10.3897/mbmg.6.78762

12-04-2022

Unique: 3627 | Total: 5153

Reprint: € 6,00

Emerging Technique

A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (Desmodus rotundus)

Physilia Y. S. Chua, Christian Carøe, Alex Crampton-Platt, Claudia S. Reyes-Avila, Gareth Jones, Daniel G. Streicker, Kristine Bohmann

10.3897/mbmg.6.78756

07-04-2022

Unique: 4209 | Total: 6472

Reprint: € 7,00

Research Article

Metagenomic insights to the functional potential of sediment microbial communities in freshwater lakes

Laura Biessy, John K. Pearman, Sean Waters, Marcus J. Vandergoes, Susanna A. Wood

10.3897/mbmg.6.79265

25-03-2022

Unique: 4911 | Total: 8509

Reprint: € 7,00

Research Article

Annual dynamics of eukaryotic and bacterial communities revealed by 18S and 16S rRNA metabarcoding in the coastal ecosystem of Sagami Bay, Japan

Sayaka Sogawa, Kenji Tsuchiya, Satoshi Nagai, Shinji Shimode, Victor S. Kuwahara

10.3897/mbmg.6.78181

28-02-2022

Unique: 5251 | Total: 9104

Reprint: € 8,00

Research Article

Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding

Satoshi Nagai, Sirje Sildever, Noriko Nishi, Satoshi Tazawa, Leila Basti, Takanori Kobayashi, Yoshizumi Ishino

10.3897/mbmg.6.77704

21-02-2022

Unique: 10572 | Total: 16062

Reprint: € 7,00