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Research Article
Development and evaluation of PCR primers for environmental DNA (eDNA) metabarcoding of Amphibia
Masayuki K. Sakata
,
Mone U. Kawata
,
Atsushi Kurabayashi
,
Takaki Kurita
,
Masatoshi Nakamura
,
Tomoyasu Shirako
,
Ryosuke Kakehashi
,
Kanto Nishikawa
,
Mohamad Yazid Hossman
,
Takashi Nishijima
,
Junichi Kabamoto
,
Masaki Miya
,
Toshifumi Minamoto
10.3897/mbmg.6.76534
21-02-2022
Unique: 1470 | Total: 2705
| Access Period: 1774
Reprint: € 3,60
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Research Article
Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds
Cristina Di Muri
,
Lori Lawson Handley
,
Colin W. Bean
,
Jianlong Li
,
Graeme Peirson
,
Graham S. Sellers
,
Kerry Walsh
,
Hayley V. Watson
,
Ian J. Winfield
,
Bernd Hänfling
10.3897/mbmg.4.56959
22-10-2020
Unique: 3866 | Total: 6725
| Access Period: 938
Reprint: € 4,80
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Research Article
Comparing PCR-generated artifacts of different polymerases for improved accuracy of DNA metabarcoding
Satoshi Nagai
,
Sirje Sildever
,
Noriko Nishi
,
Satoshi Tazawa
,
Leila Basti
,
Takanori Kobayashi
,
Yoshizumi Ishino
10.3897/mbmg.6.77704
21-02-2022
Unique: 1178 | Total: 1983
| Access Period: 883
Reprint: € 4,80
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Research Article
Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing
Masayuki Ushio
,
Hiroaki Murakami
,
Reiji Masuda
,
Tetsuya Sado
,
Masaki Miya
,
Sho Sakurai
,
Hiroki Yamanaka
,
Toshifumi Minamoto
,
Michio Kondoh
10.3897/mbmg.2.23297
14-03-2018
Unique: 5874 | Total: 11231
| Access Period: 753
Reprint: € 4,80
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Methods
Mu-DNA: a modular universal DNA extraction method adaptable for a wide range of sample types
Graham S. Sellers
,
Cristina Di Muri
,
Africa Gómez
,
Bernd Hänfling
10.3897/mbmg.2.24556
05-07-2018
Unique: 6542 | Total: 11162
| Access Period: 707
Reprint: € 3,60
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Software Description
Combining NCBI and BOLD databases for OTU assignment in metabarcoding and metagenomic datasets: The BOLD_NCBI _Merger
Jan-Niklas Macher
,
Till-Hendrik Macher
,
Florian Leese
10.3897/mbmg.1.22262
15-12-2017
Unique: 5473 | Total: 9883
| Access Period: 631
Reprint: € 2,60
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Primer Validation
Internal transcribed spacer primer evaluation for vascular plant metabarcoding
Andreas Kolter
,
Birgit Gemeinholzer
10.3897/mbmg.5.68155
02-09-2021
Unique: 1217 | Total: 2193
| Access Period: 592
Reprint: € 5,90
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Research Article
Annual dynamics of eukaryotic and bacterial communities revealed by 18S and 16S rRNA metabarcoding in the coastal ecosystem of Sagami Bay, Japan
Sayaka Sogawa
,
Kenji Tsuchiya
,
Satoshi Nagai
,
Shinji Shimode
,
Victor S. Kuwahara
10.3897/mbmg.6.78181
28-02-2022
Unique: 693 | Total: 1281
| Access Period: 571
Reprint: € 5,90
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Primer Validation
Short COI markers for freshwater macroinvertebrate metabarcoding
Ecaterina Vamos
,
Vasco Elbrecht
,
Florian Leese
10.3897/mbmg.1.14625
20-09-2017
Unique: 5591 | Total: 10093
| Access Period: 561
Reprint: € 5,90
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Software Description
BOLDigger – a Python package to identify and organise sequences with the Barcode of Life Data systems
Dominik Buchner
,
Florian Leese
10.3897/mbmg.4.53535
03-06-2020
Unique: 2678 | Total: 4555
| Access Period: 558
Reprint: € 2,30
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Primer Validation
Development of a new set of PCR primers for eDNA metabarcoding decapod crustaceans
Tomoyuki Komai
,
Ryo O. Gotoh
,
Tetsuya Sado
,
Masaki Miya
10.3897/mbmg.3.33835
24-04-2019
Unique: 4531 | Total: 7577
| Access Period: 548
Reprint: € 5,90
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Emerging Technique
A two-step metagenomics approach for the identification and mitochondrial DNA contig assembly of vertebrate prey from the blood meals of common vampire bats (
Desmodus rotundus
)
Physilia Y. S. Chua
,
Christian Carøe
,
Alex Crampton-Platt
,
Claudia S. Reyes-Avila
,
Gareth Jones
,
Daniel G. Streicker
,
Kristine Bohmann
10.3897/mbmg.6.78756
07-04-2022
Unique: 654 | Total: 1141
| Access Period: 544
Reprint: € 4,80
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