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Research Article
Choice of DNA extraction method affects DNA metabarcoding of unsorted invertebrate bulk samples
Markus Majaneva
,
Ola H. Diserud
,
Shannon H.C. Eagle
,
Mehrdad Hajibabaei
,
Torbjørn Ekrem
10.3897/mbmg.2.26664
23-08-2018
Unique: 7975 | Total: 13342
| Access Period: 526
Reprint: € 6,00
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Research Article
Metagenomic exploration of endosymbionts and pathogens in the tropical lineage of
Rhipicephalus sanguineus
sensu lato (s.l.) ticks in Colombia
Luisa Paez-Triana
,
Giovanny Herrera
,
Laura Vega
,
Diego García-Corredor
,
Martin Orlando Pulido Medellín
,
Alberto Paniz-Mondolfi
,
Marina Muñoz
,
Juan David Ramírez
10.3897/mbmg.7.109085
20-11-2023
Unique: 1868 | Total: 2943
| Access Period: 500
Reprint: € 12,00
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Research Article
Evaluating the performance of DNA metabarcoding for assessment of zooplankton communities in Western Lake Superior using multiple markers
Christy Meredith
,
Joel Hoffman
,
Anett Trebitz
,
Erik Pilgrim
,
Sarah Okum
,
John Martinson
,
Ellen S. Cameron
10.3897/mbmg.5.64735
21-07-2021
Unique: 3324 | Total: 5628
| Access Period: 492
Reprint: € 7,00
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Software Description
Combining NCBI and BOLD databases for OTU assignment in metabarcoding and metagenomic datasets: The BOLD_NCBI _Merger
Jan-Niklas Macher
,
Till-Hendrik Macher
,
Florian Leese
10.3897/mbmg.1.22262
15-12-2017
Unique: 7651 | Total: 14163
| Access Period: 489
Reprint: € 5,00
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Software Description
The ASV Registry: a place for ASVs to be
Christian Bräunig
,
Sandra Meid
,
Björn Quast
,
Vera Rduch
,
Peter Grobe
Part of: Towards standardized molecular biodiversity monitoring
10.3897/mbmg.8.124564
04-10-2024
Unique: 605 | Total: 907
| Access Period: 479
Reprint: € 8,00
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Research Article
Improving understanding of nematode communities in agricultural settings: a comparison of mitometagenomics and morphology
Eli M. S. Gendron
,
Clemen J. Oliveira
,
Johan Desaeger
,
Dorota L. Porazinska
10.3897/mbmg.8.123387
23-07-2024
Unique: 817 | Total: 1814
| Access Period: 472
Reprint: € 13,00
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Methods
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Frédéric Rimet
,
Eva Aylagas
,
Angel Borja
,
Agnès Bouchez
,
Alexis Canino
,
Christian Chauvin
,
Teofana Chonova
,
Fedor Ciampor Jr
,
Filipe О. Costa
,
Benoit J. D. Ferrari
,
Romain Gastineau
,
Chloé Goulon
,
Muriel Gugger
,
Maria Holzmann
,
Regine Jahn
,
Maria Kahlert
,
Wolf-Henning Kusber
,
Christophe Laplace-Treyture
,
Florian Leese
,
Frederik Leliaert
,
David G. Mann
,
Frédéric Marchand
,
Vona Méléder
,
Jan Pawlowski
,
Serena Rasconi
,
Sinziana Rivera
,
Rodolphe Rougerie
,
Magali Schweizer
,
Rosa Trobajo
,
Valentin Vasselon
,
Régis Vivien
,
Alexander Weigand
,
Andrzej Witkowski
,
Jonas Zimmermann
,
Torbjørn Ekrem
10.3897/mbmg.5.58056
26-02-2021
Unique: 5230 | Total: 8478
| Access Period: 463
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Research Article
Inter-laboratory ring test for environmental DNA extraction protocols: implications for marine megafauna detection using three novel qPCR assays
Lauren Kelly Rodriguez
,
Lorenzo De Bonis
,
Jack McKee
,
James A. McKenna
,
Teddy Urvois
,
Eleonora Barbaccia
,
Eileen Dillane
,
Caterina Lanfredi
,
Helene Hjellnes
,
Armelle Jung
,
Enrico Villa
,
Arianna Azzellino
,
Jon-Ivar Westgaard
,
Erwan Quéméré
,
Bettina Thalinger
Part of: Towards standardized molecular biodiversity monitoring
10.3897/mbmg.9.128235
07-01-2025
Unique: 555 | Total: 778
| Access Period: 457
Reprint: € 13,00
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Emerging Technique
NAMERS: a purpose-built reference DNA sequence database to support applied eDNA metabarcoding
Kristen M. Westfall
,
Gregory A. C. Singer
,
Muneesh Kaushal
,
Scott R. Gilmore
,
Nicole Fahner
,
Mehrdad Hajibabaei
,
Cathryn L. Abbott
Part of: Towards standardized molecular biodiversity monitoring
10.3897/mbmg.8.125095
19-11-2024
Unique: 548 | Total: 749
| Access Period: 457
Reprint: € 9,00
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Research Article
Autonomous samplers and environmental DNA metabarcoding: sampling day and primer choice have greatest impact on fish detection probabilities
Devin N. Jones
,
Ben C. Augustine
,
Patrick Hutchins
,
James M. Birch
,
Kevan M. Yamahara
,
Scott Jensen
,
Rodney Richardson
,
Regina Trott
,
James R. Campbell
,
Elliott Barnhart
,
Adam J. Sepulveda
10.3897/mbmg.8.122375
13-09-2024
Unique: 844 | Total: 1927
| Access Period: 456
Reprint: € 9,00
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R Package
BBI: an R package for the computation of Benthic Biotic Indices from composition data
Tristan Cordier
,
Jan Pawlowski
10.3897/mbmg.2.25649
05-07-2018
Unique: 5812 | Total: 42952
| Access Period: 454
Reprint: € 3,00
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Research Article
Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan
Shunsuke Matsuoka
,
Yoriko Sugiyama
,
Hirotoshi Sato
,
Izumi Katano
,
Ken Harada
,
Hideyuki Doi
10.3897/mbmg.3.36335
10-07-2019
Unique: 4623 | Total: 8412
| Access Period: 453
Reprint: € 6,00
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