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Research Article
Metabarcoding of soil nematodes: the importance of taxonomic coverage and availability of reference sequences in choosing suitable marker(s)
Mohammed Ahmed
,
Matthew Alan Back
,
Thomas Prior
,
Gerrit Karssen
,
Rebecca Lawson
,
Ian Adams
,
Melanie Sapp
10.3897/mbmg.3.36408
06-11-2019
Unique: 7990 | Total: 14904
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Research Article
Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces
Timothy Lee
,
Yohannes Alemseged
,
Andrew Mitchell
10.3897/mbmg.2.22467
14-03-2018
Unique: 5348 | Total: 14881
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Research Article
Estimating fish alpha- and beta-diversity along a small stream with environmental DNA metabarcoding
Yiyuan Li
,
Nathan T. Evans
,
Mark A. Renshaw
,
Christopher L. Jerde
,
Brett P. Olds
,
Arial J. Shogren
,
Kristy Deiner
,
David M. Lodge
,
Gary A. Lamberti
,
Michael E. Pfrender
10.3897/mbmg.2.24262
14-05-2018
Unique: 7949 | Total: 13892
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Methods
A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy
Alexander M. Weigand
,
Jan-Niklas Macher
10.3897/mbmg.2.26869
23-08-2018
Unique: 7123 | Total: 13657
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Software Description
BOLDigger – a Python package to identify and organise sequences with the Barcode of Life Data systems
Dominik Buchner
,
Florian Leese
10.3897/mbmg.4.53535
03-06-2020
Unique: 7714 | Total: 13319
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Research Article
Monitoring riverine fish communities through eDNA metabarcoding: determining optimal sampling strategies along an altitudinal and biodiversity gradient
Jonas Bylemans
,
Dianne M. Gleeson
,
Mark Lintermans
,
Christopher M. Hardy
,
Matthew Beitzel
,
Dean M. Gilligan
,
Elise M. Furlan
10.3897/mbmg.2.30457
31-12-2018
Unique: 7391 | Total: 13236
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Research Article
Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method
Kristy Deiner
,
Jacqueline Lopez
,
Steve Bourne
,
Luke Holman
,
Mathew Seymour
,
Erin K. Grey
,
Anaïs Lacoursière
,
Yiyuan Li
,
Mark A. Renshaw
,
Michael E. Pfrender
,
Marc Rius
,
Louis Bernatchez
,
David M. Lodge
10.3897/mbmg.2.28963
02-11-2018
Unique: 7257 | Total: 12256
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Research Article
Geographic distance and mountain ranges structure freshwater protist communities on a European scalе
Jens Boenigk
,
Sabina Wodniok
,
Christina Bock
,
Daniela Beisser
,
Christopher Hempel
,
Lars Grossmann
,
Anja Lange
,
Manfred Jensen
10.3897/mbmg.2.21519
02-01-2018
Unique: 6695 | Total: 12250
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Research Article
Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species
Till-Hendrik Macher
,
Robin Schütz
,
Jens Arle
,
Arne J. Beermann
,
Jan Koschorreck
,
Florian Leese
Part of: DNA and eDNA methods for bioassessment and monitoring: Steps towards formal implementation
10.3897/mbmg.5.66557
13-07-2021
Unique: 8630 | Total: 11994
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Methods
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Frédéric Rimet
,
Eva Aylagas
,
Angel Borja
,
Agnès Bouchez
,
Alexis Canino
,
Christian Chauvin
,
Teofana Chonova
,
Fedor Ciampor Jr
,
Filipe О. Costa
,
Benoit J. D. Ferrari
,
Romain Gastineau
,
Chloé Goulon
,
Muriel Gugger
,
Maria Holzmann
,
Regine Jahn
,
Maria Kahlert
,
Wolf-Henning Kusber
,
Christophe Laplace-Treyture
,
Florian Leese
,
Frederik Leliaert
,
David G. Mann
,
Frédéric Marchand
,
Vona Méléder
,
Jan Pawlowski
,
Serena Rasconi
,
Sinziana Rivera
,
Rodolphe Rougerie
,
Magali Schweizer
,
Rosa Trobajo
,
Valentin Vasselon
,
Régis Vivien
,
Alexander Weigand
,
Andrzej Witkowski
,
Jonas Zimmermann
,
Torbjørn Ekrem
10.3897/mbmg.5.58056
26-02-2021
Unique: 6688 | Total: 10468
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Forum Paper
Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments
Rosetta C. Blackman
,
Elvira Mächler
,
Florian Altermatt
,
Amanda Arnold
,
Pedro Beja
,
Pieter Boets
,
Bastian Egeter
,
Vasco Elbrecht
,
Ana Filipa Filipe
,
J. Iwan Jones
,
Jan Macher
,
Markus Majaneva
,
Filipa M. S. Martins
,
Cesc Múrria
,
Kristian Meissner
,
Jan Pawlowski
,
Paul L. Schmidt Yáñez
,
Vera M.A. Zizka
,
Florian Leese
,
Benjamin Price
,
Kristy Deiner
10.3897/mbmg.3.34735
11-07-2019
Unique: 6254 | Total: 10301
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Software Description
Alignment-free classification of COI DNA barcode data with the Python package Alfie
Cameron M. Nugent
,
Sarah J. Adamowicz
10.3897/mbmg.4.55815
10-09-2020
Unique: 5033 | Total: 10060
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