Review Article |
Corresponding author: Alexander M. Weigand ( alexander.weigand@mnhn.lu ) Academic editor: Miklós Bálint
© 2021 Alexander M. Weigand, Noah Desquiotz, Hannah Weigand, Nikolaus Szucsich.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Weigand AM, Desquiotz N, Weigand H, Szucsich N (2021) Application of propylene glycol in DNA-based studies of invertebrates. Metabarcoding and Metagenomics 5: e57278. https://doi.org/10.3897/mbmg.5.57278
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High-throughput sequencing (HTS) studies on invertebrates commonly use ethanol as the main sample fixative (upon collection) and preservative (for storage and curation). However, alternative agents exists, which should not be automatically neglected when studies are newly designed. This review provides an overview of the application of propylene glycol (PG) in DNA-based studies of invertebrates, thus to stimulate an evidence-based discussion.
The use of PG in DNA-based studies of invertebrates is still limited (n = 79), but a steady increase has been visible since 2011. Most studies used PG as a fixative for passive trapping (73%) and performed Sanger sequencing (66%; e.g. DNA barcoding). More recently, HTS setups joined the field (11%). Terrestrial Coleoptera (30%) and Diptera (20%) were the most studied groups. Very often, information on the grade of PG used (75%) or storage conditions (duration, temperature) were lacking. This rendered direct comparisons of study results difficult, and highlight the need for further systematic studies on these subjects.
When compared to absolute ethanol, PG can be more widely and cheaply acquired (e.g. as an antifreeze, 13% of studies). It also enables longer trapping intervals, being especially relevant at remote or hard-to-reach places. Shipping of PG-conserved samples is regarded as risk-free and is authorised, pinpointing its potential for larger trapping programs or citizen science projects. Its property to retain flexibility of morphological characters as well as to lead to a reduced shrinkage effect was especially appraised by integrative study designs. Finally, the so far limited application of PG in the context of HTS showed promising results for short read amplicon sequencing and reduced representation methods. Knowledge of the influence of PG fixation and storage for long(er) read HTS setups is currently unavailable.
Given our review results and taking difficulties of direct methodological comparisons into account, future DNA-based studies of invertebrates should on a case-by-case basis critically scrutinise if the application of PG in their anticipated study design can be of benefit.
alternative fixative, bioassessment, DNA integrity, DNA preservation, environmental monitoring
DNA-based high-throughput sequencing (HTS) approaches such as DNA metabarcoding have lately revolutionised our ability to comparatively assess and monitor biodiversity over large geographical scales and at an unprecedented rate (
The fixative (or trapping / killing agent) is a crucial parameter for DNA-based studies as it has to secure the integrity of the DNA from the very beginning (see e.g.
As such an alternative, propylene glycol (or propane-1,2-diol; here further abbreviated as PG) has a number of characteristics that potentially render it beneficial in large-scale DNA-based HTS bioassessment and biomonitoring programmes: (i) low acquisition cost but high general availability, as it can be bought, for example, as low-budget antifreeze in specialist car dealers or as an additive from the cosmetic or food industry (additive E1520), (ii) non-toxicity (i.e. considered as a GRAS (generally regarded as safe) material), (iii) very low volatility, (iv) environmental safety, (v) risk-free transport of samples according to the regulations of the International Air Transport Association (IATA), and (vi) ability to ensure DNA integrity as well as to preserve most morphological characteristics (
Propylene glycol is a well-established agent in molecular cryobiology, notably used for the cryopreservation of sperms and cell cultures (
The aim of this review is to summarise the findings of studies investigating the application of PG for DNA-based analyses of invertebrates. We will distinguish its application as a fixative (during sample collection) and as a preservative (for sample storage and curation). The collated information should help to transfer the available knowledge to the wider community, stimulating an evidence-based discussion on how to further reduce costs for DNA-conform sample collection and curation in larger environmental programmes by exploring alternative fixation and preservation agents.
A topical core literature research was conducted on 07.10.2020 within the ISI Web of Science (WoS) and screening ‘all databases’. The following search strings were investigated: (1) “propylene glycol” AND “DNA” AND “invertebrate*”, (2) “propylene glycol” AND “DNA” AND “insect”, (3) “propane-1,2-diol” AND “DNA” AND “invertebrate*” and (4) “propane-1,2-diol” AND “DNA” AND “insect”. On the very same day, and because the WoS search only will detect literature records which are ISI-listed and only will retrieve hits in case the search string terms appear in the title, abstract, topic or as keywords, a complementing Google Scholar (GS) search was performed (as e.g. proposed by
The four search strings yielded the following number of literature records within the ISI WoS: (1) 20, (2) 8, (3) 0 and (4) 1. From those, only records which transparently stated the application of PG during specimen handling have been considered, resulting in a total of only 12 studies. Google Scholar search strings yielded the following constant number of literature records, regardless of whether the search was performed via two different IP-addresses in two countries (Luxembourg and Germany), within two different Google profiles, using a private browser window or being logged on/off from personal Google profiles: (1) 509, (2) 1930, (3) 23 and (4) 432.
The majority of studies had to be excluded, a) because they used PG as a trapping material for invertebrates but only cited literature referring to the application of DNA-based tools, or b) as they referred to yeast species molecularly analysed. Furthermore, reviews or studies which only dealt with the DNA analysis of e.g. parasites or gut contents of invertebrates were omitted, but will be discussed. Doctoral and master theses which were subsequently published as scientific articles were counted as a single entry.
A total of 79 publications was retrieved (Table
Overview of studies which have used propylene glycol either as a fixative or preservative for the DNA-based analysis of invertebrates. RT = room temperature; PG = propylene glycol; n.a. = not applicable or not available. Studies found by both the ISI Web of Science and Google Scholar searches, are marked in bold. All others were only detected by the latter search engine. N = 79, as of 07.10.2020.
Study | Year | Taxon | DNA-based approach | PG specificities | Fixation step | Preservation step | Central outcomes | ||
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Condition(s) | Duration | Condition(s) | Duration | ||||||
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2003 | Crustacea (Isopoda) | PCR-based visualisation (16S, 18S) | Propylene glycol | specimens directly placed in pure PG | 12 months (RT) | double-stranded DNA profiles of PG-conserved specimens were sufficient for PCR, but likely not adequate for long-term storage of museum samples | ||
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2003 | Hymenoptera (Apidae) | Microsatellite and CytB fragment analyses | Low-toxicity antifreeze (Lowtox, Prestone Inc., Danbury, CT) | specimens directly placed in pure PG | 5, 20 or 90 days (20 °C or 40 °C) | 95% ethanol | up to 4 months (4–6 °C) | nuclear and mtDNA were amplifiable even at the most extreme conditions (90 days, 40 °C), although a slightly decreasing trend was observed |
aerial pitfall trap with PG | 3 weeks | ||||||||
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2005 | Hymenoptera (Apidae) | CytB, 16S and COI fragment analysis | Propylene glycol | baited aerial pitfall trap with 50% PG and soap | ca. weekly for 8 months | 95% ethanol | n.a. | well preserved for molecular analysis |
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2005 | Arachnida (Aranea, Scorpiones) | Actin and COI fragment analysis | Propylene glycol (99.5+% laboratory grade, Sigma-Aldrich) | specimens directly placed in pure PG | 6 weeks (40 °C, 19–24 °C, 2–4 °C, -20 °C or -40 °C; dark) | 95% ethanol (4 °C) | 1 day | PG (and RNAlater) significantly better preserved nuclear and mtDNA than ethanol at various concentrations and in different study designs: mtDNA successfully amplified under most extreme conditions (6 weeks, 40 °C); ncDNA for small soft-bodied species only at room temperature or lower, and for large heavily sclerotized species at 2–4 °C or lower |
Hendrixson (2006) | 2006 | Arachnida (Aranea) | Sanger sequencing of COI and 28S | Propylene glycol | pan trap with 1:1 PG and 100% ethanol | each 2 weeks for 2 months | 100% ethanol, than 80% ethanol (-20 °C) | n.a. | well preserved for morphological and molecular analyses |
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2007 | Hemiptera (Aleyrodidae) | Sanger sequencing of COI | Propylene glycol | specimens directly placed in pure PG | n.a. | well preserved for morphological and molecular analyses | ||
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2008 | Coleoptera (Curculionidae) | Sanger sequencing of COI | Propylene glycol | funnel trap with pure PG | 1 week | absolute ethanol | n.a. | well preserved for morphological and molecular analyses, in particular in periods of no rainfall |
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2008 | Crustacea (Amphipoda) | Sanger sequencing of COI, COII and H3 | Propylene glycol | baited pitfall trap with PG | several weeks to months | ethanol | n.a. | well preserved for morphological and molecular analyses |
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2010 | Coleoptera | Sanger sequencing of mtDNA, single and multi-copy ncDNA genes | Propylene glycol | specimens directly placed in 20% PG | n.a. | ethanol | n.a. | very fast DNA isolation (ranging from 2–20 minutes); well preserved for parallel morphological and genetic analyses; specimens stored in 20% PG and ethanol did not differ from specimens stored in other preservatives |
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2010 | Hymenoptera (Anthophila) | Sanger sequencing of COI | Propylene glycol | pan trap with 75% PG | each two weeks | 95% ethanol (refrigerator) | n.a. | specimens suitable for barcoding |
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2010 | Arachnida (Aranea) | Sanger sequencing of COI | Mono-propylene glycol | pitfall trap with pure PG | 2 weeks over 3 months | 95% ethanol (-20 °C) | n.a. | well preserved for morphological and molecular analyses |
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2010 | Coleoptera (Curculionidae) | Microsatellite genotyping | Propylene glycol | pheromone-baited trap with PG | n.a. | 99.5% ethanol (-20 or 4 °C) | n.a. | specimens suitable for microsatellite analysis |
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2010 | Arachnida (Aranea) | Sanger sequencing of COI and restriction site analysis | Propylene glycol | pitfall trap with 20% PG | 1 or 2 weeks | 70% ethanol | months | well preserved for morphological and molecular analyses |
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2011 | Annelida (Oligochaeta) | Sanger sequencing of COI and 16S | Propylene glycol | specimens directly placed in 98% ethanol | n.a. | PG | n.a. | well preserved for morphological and molecular analyses |
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2011 | Coleoptera (Tenebrionidae, Bostrichidae) | Arginine kinase fragment analysis | 99.5% Propylene glycol (Sigma-Aldrich Inc, St. Louis, MO) | specimens directly placed in PG (100%, 80%, 50% diluted or with PBS, with / without Triton-X 100) | 3, 7 or 14 days (30 °C) | absolute ethanol (Sigma-Aldrich, molecular grade) (-80 °C) | n.a. | treatments with specimens stored in mixtures containing PG produced significantly less successful PCR results. PCR success was higher for specimens stored in pure PG than for 80% PG |
99.7% propylene glycol (Ajax FineChem Pty Ltd, Taren Point NSW, Australia) | Lindgren funnel trap with PG | 1 week | specimens in PG produced significantly less successful PCR results than specimens maintained in PBS or dry | ||||||
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2012 | Coleoptera (Dermestidae) | Sanger sequencing of COI, CytB and 18S | Propylene glycol | baited lure trap with 20% PG | two months | rinsed with sterile water, rinsed with 70% ethanol and stored in 95% ethanol | n.a. (-20 °C) | well preserved for morphological and molecular analyses |
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2012 | Coleoptera (Carabidae) | Sanger sequencing of COI | Propylene glycol | pitfall trap with 66% PG | 1 week | 75% ethanol, or rinsed in water and stored in 95% ethanol (-20 °C) | n.a. | well preserved for morphological and molecular analyses |
Gruber et al. (2012) | 2012 | Hymenoptera (Formicidae) | Sanger sequencing of COI | Propylene glycol | pitfall trap with 33% PG | 1 day | 95% ethanol (4 °C) | n.a. | well preserved for morphological and molecular analyses |
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2012 | Arachnida (Acari) | Sanger sequencing of COI and 28S | Propylene glycol | baited Lindgren funnel trap with PG | ~2 weeks | 95% ethanol (-20 °C) | n.a. | well preserved for morphological and molecular analyses |
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2012 | Hemiptera (Aphidae) | Sanger sequencing of COI | Propylene glycol | trap with 50% PG with Bitrex and soap | each 2–3 days for 2 months | 50% PG (4 °C) | up to 1 week | PG concentration checked in the field remained in the range 40–60%; collected material mostly suitable for morphological analysis, barcoding and RNA virus detection; although higher concentrations yielded better results |
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2012 | Diptera (Muscidae) | Sanger sequencing of COI | Propylene glycol (food quality) | pan trap with 33% PG and soap | 3–4 days | n.a. | n.a. | handling of PG was problematic because treated as hazardous waste and forbidden to dispose in local septic system; specimens suitable for barcoding and morphological analysis |
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2012 | Diptera (Calliphoridae, Fanniidae, Muscidae, Tephritidae) | Sanger sequencing of COI | Propylene glycol | lure-baited hanging trap with pure PG | n.a. | assumably pure PG | n.a. | easy transport of samples; >90% of specimens morphologically characterised and barcoded |
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2012 | Myriapoda (Chilopoda) | Sanger sequencing of COI and 16S | Propylene glycol | specimens directly placed in 95% or 75–80% ethanol | n.a. | PG, than 96% ethanol | n.a. | effective shipping of samples; well preserved for molecular analysis |
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2013 | Coleoptera (Carabidae, Staphylinidae) | Sanger sequencing of COI | Propylene glycol (Neogen Corporation, Item No. 79231), | specimens directly placed in 100% ethanol | 2 days | 20%, 40%, 60%, 80% and pure PG (21 °C) | up to 6 months | positive PCR or sequencing results were obtained in all cases except for 20% PG |
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2013 | Diptera (Tephritidae) | Microsatellite genotyping | Propylene glycol | insecticide-baited hanging trap with PG | n.a. | effective shipping of samples; well preserved for morphological and molecular analyses | ||
Moreau et al. (2013) | 2013 | Hymenoptera (Formicidae) | Long-wavelength rhodopsin and COI fragment analysis | 100% food-grade PG | specimens directly placed in pure PG | either remaining in PG for up to 10 months, or transferred into 95% ethanol after 6 months (6+4 months storage time) | PG and ethanol allowed for the highest PCR success rates. PG-preserved samples showed comparatively high DNA concentrations even after 10 months | ||
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2013 | Mecoptera | Sanger sequencing of COII | Propylene glycol based antifreeze (Sierra brand) | pitfall trap with PG | two weeks | 100% ethanol (-70F) | n.a. | well preserved for molecular analysis |
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2013 | Arachnida (Aranea) | Sanger sequencing of COI, ITS and ND1 | Propylene glycol | pitfall and pan trap with 50% PG | 3–4 days for 2 weeks | 95% ethanol (4 °C) | n.a. | well preserved for morphological and molecular analyses |
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2014 | Diptera (Tephritidae) | Sanger sequencing of COI, NAD4–3’, CAD, period, ITS1 and ITS2 | Propylene glycol | insecticide-baited hanging trap with PG | variable | 100% ethanol | n.a. | effective shipping of samples; well preserved for morphological and molecular analyses |
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2014 | Coleoptera (Carabidae); Myriapoda; Collembola | Sanger sequencing of COI, ITS1 and ANT | Propylene glycol | pitfall trap with PG:ethanol (1:1) | n.a. | 100% molecular-grade ethanol | n.a. | well preserved for molecular analysis |
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2014 | Coleoptera (Carabidae) | Sanger sequencing of COI, CAD and 28S | Propylene glycol | pan trap with PG | n.a. | suitable for all molecular investigations; however, higher amplification success when PG-fixed specimens were dry pinned or transferred to 95% ethanol within 1–2 weeks | ||
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2015 | Diptera (Tephritidae) | Sanger sequencing of ITS1 | Propylene glycol | specimens directly placed in 95% ethanol | n.a. | pure PG | n.a. | effective shipping of samples; well preserved for molecular analysis |
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2015 | Coleoptera (Curculionidae) | Sanger sequencing of COI, CytB and ITS2 | Propylene glycol | tarsal clips directly placed in PG | n.a. | 95% ethanol (-20 °C) | n.a. | well preserved for molecular analysis |
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2015 | Gastropoda (Caenogastropoda) | Sanger sequencing of COI, 16S and ITS2 | Propylene glycol | specimens directly placed in 70% ethanol | n.a. | PG, than 96% ethanol | PG-preservation only for shipping | effective shipping of samples; well preserved for morphological and molecular analyses |
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2015 | Arachnida (Aranea) | Sanger sequencing of COI | Propylene glycol (technical grade, Herrlan-PSM) | specimens directly placed in pure, 90% or 50% PG | 1, 2 and 4 weeks (refrigerator) | non-denatured 96% ethanol | n.a. | succesful barcoding under all conditions, but results potentially indicate a negative effect of water intrusion on PG-preserved specimens |
pitfall trap with PG, 2.5% acetic acid and detergent | 2 weeks over 6 weeks | 70–80% ethanol | n.a. | traps with PG captured more species (at three sites and for the most abundant families), but PG was not selectively attractive for particular taxa | |||||
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2015 | Diptera (Tephritidae) | Sanger sequencing of COI | Propylene glycol (Better World Manufacturing, Fresno, CA) | baited Lindgren funnel trap with 25% PG | 3–5 days | 95% ethanol (freezer) | n.a. | well preserved for morphological and molecular analyses |
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2015 | Coleoptera (Curculionidae) | Sanger sequencing of COI and 28S | Pink marine or recreational vehicle antifreeze (not for automobiles) | pheromone-baited Lindgren funnel trap with PG | weekly or bi-weekly | 100% ethanol | n.a. | well preserved for molecular analysis; part of specimens collected in PG-based antifreeze according to official monitoring guidelines ( |
Sánchez García et al. (2015), |
2015 | Coleoptera (Curculionidae) | Sanger sequencing of COI and COII | Propylene glycol | ethanol-baited funnal trap with PG | n.a. | n.a. | n.a. | well preserved for morphological and molecular analyses |
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2015 | Coleoptera (Curculionidae) | Sanger sequencing of COI and 28S | Propylene glycol | Lindgren funnel trap with PG | n.a. | 100% ethanol | n.a. | well preserved for morphological and molecular analyses |
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2015 | Coleoptera (Curculionidae) | Arginine kinase fragment analysis | 99% extra pure PG (Fisher) and low-toxicity antifreeze (Lowtox, Prestone Inc.) | specimens directly placed in pure PG or PG-based antifreeze | 2 or 7 days | very high qPCR success rates, no matter which storage conditions were used | ||
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2016 | Coleoptera (Zopheridae) | Sanger sequencing of COI, COII, tRNA-Leu gene and EF1α | Propylene glycol | pitfall trap with pure PG | n.a. | 100% ethanol or acetone (refrigerator) | n.a. | well preserved for morphological and molecular analyses |
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2016 | Hemiptera (Aphidae) | Microsatellite genotyping | Propylene glycol | pan trap with PG | 2-times a week for few months | 95% ethanol | n.a. | well preserved for microsatellite analysis |
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2016 | Diptera (Drosophilidae) | Microsatellite genotyping | 100% food-grade propylene glycol | baited bottle trap with PG | 1–2 days | 95% ethanol (-60 °C) | n.a. | well preserved for morphological and microsatellite analyses |
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2016 | Diptera (Calliphoridae, Fanniidae, Muscidae, Tephritidae) | High-quality genomic DNA for HTS approaches | 99.5% propylene glycol (Sigma-Aldrich) | specimens directly placed in pure PG | 1, 8, 13, 14 or 15 days (4 °C or -20 °C) | PG, 97–100% ethanol and AL buffer yielded high-quality genomic DNA, whereas RNA-free water, buffer AE and PBS failed. DNA concentration in ethanol was significantly higher at both temperatures | ||
lure-baited modified Steiner trap with PG | daily over few weeks | living specimens refrigerated than stored in pure PG (chilled) | 20 days, afterwards for max. 1 month (-80 °C) | PG storage was chosen due to its higher overall practicability compared to ethanol and RNAlater; specimens were easily transported in airplane and provided high-genomic DNA for subsequent analyses | |||||
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2016 | Hymenoptera (Anthophila) | Sanger sequencing of COI | Propylene glycol | pitfall trap with pure PG | days to few months | PG until pinning | n.a. | effective shipping of samples; well preserved for morphological and molecular analyses |
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2016 | Coleoptera (Scolytidae) | Real-time PCR of COI | Propylene glycol | Lindgren funnel trap with PG | n.a. | 95% ethanol | n.a. | well preserved for morphological and molecular analyses |
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2016 | Coleoptera (Carabidae) | Sanger sequencing of COI, ITS2, 18S and 28S | Propylene glycol | pitfall trap with PG | n.a. | pinned and dried | n.a. | well preserved for molecular analysis |
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2017 | Diptera (Tephritidae) | Sanger sequencing of COI and microsatellite genotyping | Propylene glycol | specimens directly placed in pure PG | until shipping (RT) | 95% ethanol (-20 °C) | n.a. | well preserved for morphological and molecular analyses |
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2017 | Diptera (Tephritidae) | Sanger sequencing of COI and microsatellite genotyping | Propylene glycol | specimens directly placed in pure PG | until shipping (RT) | 95% ethanol (-20 °C) | n.a. | effective shipping of samples; well preserved for morphological and molecular analyses |
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2017 | Arthropod sweep net bulk sample | COI metabarcoding | Propylene glycol antifreeze (Uni-Gard -100) | specimens directly placed in pure PG | n.a. (-23 °C) | 100% ethanol, rinsed with PBS prior to extraction | 21 days | effective shipping of samples; well preserved for morphological and genomic analyses |
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2017 | aquatic insects | Sanger sequencing of COI | Propylene glycol | specimens directly placed in 80% PG | n.a. | 95% ethanol | n.a. | specimens suitable for barcoding |
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2017 | Collembola (Dicyrtomidae) | Sanger sequencing of COI | Mono-propylene glycol (antifreeze) | baited pitfall trap with PG and soap | 2 days | Nesbitt solution | over night | well preserved for morphological and molecular analyses |
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2017 | Coleoptera (Carabidae) | Sanger sequencing of COI | Propylene glycol | pitfall trap with 50% PG | each 2 weeks over entire growing season | 95% ethanol, renewed after 24 h | up to several months | specimens highly suitable for morphological and genetic identification |
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2017 | Diptera (Calliphoridae) | Sanger sequencing of COI | nontoxic recreational vehicle antifreeze | baited bottle trap with PG | n.a. | 80% ethanol | n.a. | well preserved for morphological and molecular analyses |
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2017 | Hemiptera (Aphidae) | COI metabarcoding | Propylene glycol | specimens directly placed in pure PG | n.a. | n.a. (-80 °C) | n.a. | effective transport of samples; DNA suitable for high-throughput sequencing applications |
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2017 | Lepidoptera (Plutellidae) | SNP assay (RAD-Seq) | Propylene glycol (USP grade) | specimens directly placed in pure PG | n.a. (-20 °C) | DNA suitable for population genomic SNP analysis | ||
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2017 | Coleoptera (Lucanidae) | Sanger sequencing of COI | Propylene glycol | baited flight intercept trap with PG | each 2 weeks over 6 months | n.a. | n.a. | specimens well preserved for barcoding |
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2018 | Coleoptera (Bostrichidae) | PCR-based resistance marker screening (rph2) | Propylene glycol | lure-baited Lindgren funnel trap with PG | n.a. | n.a. | n.a. | genomic DNA suitable for mass screening of resistance marker |
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2018 | Hymenoptera (Anthophila) | Sanger sequencing of COI | Propylene glycol | Vane trap with PG | n.a. | 70% ethanol | few months (10 °C) | well preserved for morphological and molecular analyses |
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2018 | Diptera | Sanger sequencing of COI | Propylene glycol | pan trap with 50% PG and soap | 7–8 days | 95% ethanol or air-dried or ethyl acetate or hexamethyl-disilazane | n.a. | well preserved for morphological and molecular analyses |
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2018 | Hymenoptera (Formicidae) | LAMP (loop-mediated isothermal amplification) assay | Propylene glycol | baited pan trap with pure PG | 3 h | washed in 99.5% ethanol, air-dried (RT) | n.a. | well preserved for molecular analysis |
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2018 | Diptera (Culicidae; gut content) | Sanger sequencing of COI and 16S metabarcoding | Propylene glycol | suction trap with 50% PG | weekly from May to October | 95% ethanol (-20 °C) | n.a. | specimens well preserved for barcoding and microbial gut content analysis |
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2019 | Hemiptera (Aphidae) | SNP assay | Propylene glycol | pitfall trap with 25% PG | weekly for 14 weeks | undiluted ethanol (-80 °C) | n.a. | DNA suitable for population genomic SNP analysis |
Bowser et al. (2019) | 2019 | Arthropod sweep net bulk sample | COI metabarcoding | Propylene glycol antifreeze (Uni-Gard -100) | specimens directly placed in pure PG | n.a. (-23 °C) | 100% ethanol, rinsed with PBS prior to extraction | 1 week | well preserved for genomic analysis |
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2019 | Coleoptera (Buprestidae) | Sanger sequencing of COI | Propylene glycol | barrel with baited collection cups with PG | several months | n.a. | n.a. | specimens well preserved for morphological analysis, but barcoding was only partly successfull |
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2019 | Arthropod pitfall trap bulk sample | COI metabarcoding | Propylene glycol | pitfall trap with pure PG | 2–3 days | 100% ethanol (RT, -20 °C) | n.a. | well preserved for morphological and genomic analyses |
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2019 | Diptera (Tephritidae) | Sanger sequencing of COI and COII | Propylene glycol | specimens directly placed in pure PG | n.a. (RT) | effective shipping of samples; well preserved for morphological and molecular analyses | ||
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2019 | Coleoptera (Curculionidae) | Sanger sequencing of COI | Propylene glycol | ethanol-baited Lindgren funnel trap with PG | n.a. (Nov-Feb) | n.a. | n.a. | well preserved for morphological and molecular analyses |
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2019 | Arachnida (Acari) | PCR-based visualisation | Propylene glycol | specimens directly placed in pure PG | several weeks | absolute ethanol | 1 day | results for DNA quality and quantity of PG-conserved specimens similar to ethanol-conserved specimens |
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2019 | Orthoptera (Gryllidae) | PCR-based visualisation (COI) | Propylene glycol | exposure to ethyl acetate vapour, followed by dehydration in 99.5% ethanol | 1 h and 24 h | 99% PG | 1, 6 and 12 months | all replicates with PG-preserved (n = 12) were successfully amplified for all timepoints and three different fragment sizes |
-30 °C and dehydration in 99.5% ethanol | both 24 h | ||||||||
-30 °C | 24 h | ||||||||
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2019 | Arachnida (Aranea) | Sanger sequencing of COI, 12S, 16S, H3, 18S and 28S | Propylene glycol (Sierra antifreeze) | pitfall trap with PG | ~30 days | 95% ethanol for transport; 100% ethanol storage | n.a. | well preserved for morphological and molecular analyses, although heavy rainfall diluted PG in traps and has led to sediment wash-in |
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2019 | Diptera (diverse Schizophora families) | Sanger sequencing of COI | Propylene glycol | pitfall trap with 50% PG, drop of detergent | 6–8 days | 95% ethanol | n.a. | well preserved for morphological and molecular analyses |
Ballare et al. (2020) | 2020 | Hymenoptera (Anthophila) | ddRAD sequencing | Propylene glycol | Vane trap with PG, amongst other treatments (e.g. pan trapping with soapy water; netted specimens placed in ethanol) | 5 days | 100% ethanol | n.a. (until pinning) | all treatments produced a large number of high-quality loci (>4,000, ~20×). In comparison, the two PG-preserved species showed average DNA concentrations, but higher than average mean locus depths and lower than average mean numbers of polymorphic loci |
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2020 | Diptera (Tephritidae) | Sanger sequencing of COI | Propylene glycol | specimens directly placed in pure PG | n.a. (RT) | effective shipping of samples; suitable for DNA barcoding | ||
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2020 | Coleoptera (diverse) | COI and 16S metabarcoding | 100% food-grade propylene glycol | pitfall trap with pure PG | 30 days | 95% ethanol | n.a. (-20 °C) | well preserved for morphological and molecular analyses |
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2020 | Coleoptera (Scarabaeidae) | Sanger sequencing of COI | Propylene glycol | flight intercept trap with PG:water mix | n.a. | ethanol (after 2–4 weeks) | n.a. | well preserved for morphological and molecular analyses |
2020 | Coleoptera (Curculionidae) | Sanger sequencing of COI | Propylene glycol | lured Lindgren funnel trap with 30% PG | 15 days | 96% ethanol | n.a. | well preserved for morphological and molecular analyses, as well as for molecular screening of phytopathogenic fungi | |
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2020 | Hymenoptera, Diptera, Coleoptera | PCR-based visualisation (COI) | Propylene glycol | specimens directly placed in 98% PG | 2 weeks to 205/215 days (RT) | all, respectively, 96% of PG-preserved specimens produced PCR bands after 2 weeks and 6 months for two primer pairs and the DNeasy Blood and Tissue kit; performance was better than for 99.5% ethanol; PrepMan Ultra kit performance was less sophisticated | ||
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2020 | benthic macroinvertebrate bulk sample | COI metabarcoding | Absolute Zëro RV Waterline Antifreeze (Recochem, Montreal, QC) | PG added to homogenized mock communities; or samples fixed in PG and than homogenized (ratio 1:3 fixative to sample) | 3 days (RT) | evaporation step prior to DNA extraction was ommitted as PG does not inhibit PCR; communities are highly similar and even showed higher proportion of arthropod reads and higher richness than samples conserved with >99% lab grade ethanol |
Cumulated number of studies which have used propylene glycol either as a fixative or preservative in the DNA-based analysis of invertebrates. Arranged by the taxonomic groups in focus. In cases where several of the indicated groups were targeted, the study was placed into the category “others”. N = 79, as of 07.10.2020.
In the majority of study designs, PG was used as a fixative for passive trapping (n = 53, 73%), and less frequently as a fixative upon manual collection of living specimens (32%). Either food-/laboratory-grade PG (14%; Sigma-Aldrich, Ajax FineChem, Neogen, Herrlan-PSM, Old World Industries, Better World Manufacturing, ClassiKool Ltd.) or PG-based antifreezes (13%; Lowtox, Absolute Zëro RV Waterline, Sierra, Uni-Gard) were used, but in 75% of all studies no further chemical properties or customer specifications were provided. PG concentrations were in most cases higher than 95% (for 70% of study designs), in fewer instances between 50–75% (16% study designs) or below 50% (11% study designs). Information on storage conditions for PG-preserved specimens was also very scarce: 27% of studies did not report any storage duration and for 41% of studies no storage temperatures were provided. Otherwise, PG-preserved specimens were stored for quite variable time spans, i.e. for more than half a year (10%), 1–6 months (10%), 1–4 weeks (20%), below 1 week (17%) or even for shipping only (17%, variable duration). If information was provided, specimens most often were stored at RT (28%), less frequently frozen (17%) or refrigerated (10%). Sanger sequencing was the most frequent evaluation method (66%), followed by PCR-based analyses (16%), HTS (11%) and microsatellite genotyping (9%). Studies performing two conceptual approaches, e.g. Sanger sequencing of COI and COI metabarcoding, were included in both categories.
Our results indicate that PG is widely applied as a fixative in a variety of passive trapping methods (e.g. pan trap, funnel trap, aerial pitfall trap; baited and unbaited) and for various organism groups (mainly beetles and flies, but also spiders, bees and aphids). Likewise, actively collected single specimens or – in a few cases – invertebrate bulk samples were fixed with PG (e.g.
Amongst others, passive trapping intervals are determined by the accessibility of the sampling location, the volume of the trapping containers, the evaporation rate of the fixative and local environmental parameters such as humidity, temperature, rainfall or UV-exposure. In case of excessive heat and high temperatures (arid and hot), traps with ethanol or (salted) water frequently dry out and either have to be visited and re-filled more frequently, or short(er) trapping periods have to be chosen. The evaporation rate of PG is >500-times lower than for ethanol (Moreau et al. 2013). As such a low volatile agent, PG-equipped traps can retain their volumes more or less constant over several weeks to months (
Propylene glycol is in accordance with the Dangerous Goods Regulations of The International Air Transport Association (IATA). This means that PG-fixed samples are suitable for direct shipping and do not have to be transferred to another chemical agent on the spot. This characteristic was especially important for studies in remote areas (e.g.
Another relevant aspect refers to a potential catch bias caused by the fixative. Although
Propylene glycol was only occasionally used as a medium-term preservative or storage medium. After PG fixation, most samples were stored in ≥95% ethanol until DNA extraction or PG-fixed samples directly analysed within a few days when retrieved from the field. Nevertheless,
If we adopt the results to common practices of sample storage, it tells us that PG-preserved samples should preferably be stored cool and dark just like ethanol-preserved samples. Yet, DNA quality and quantity of long-term stored, chilled PG-preserved samples should be investigated in further detail.
Sufficiently high DNA quantities and DNA qualities are prerequisites in HTS studies.
However, specimens were stored at room temperature, which showed a strong degradation effect in
Systematic studies analysing the impact of PG fixation and preservation in the context of HTS are widely lacking. Still, first case studies indicate a high applicability of PG fixation for short read amplicon sequencing (metabarcoding;
Besides studies on short read amplicon sequencing, the applicability of PG was shown for short read reduced representation methods (RAD-sequencing;
To the best of our knowledge, no study used PG-fixed or -preserved specimens for invertebrate genome sequencing. Our assumption, however, would be that if samples are fixed and stored under optimal conditions, genome sequencing based on short read lengths should be possible. However, how ultra-long sequencing (e.g. Nanopore) will be affected by potential DNA degradation effects of PG remains unclear and should be explicitly addressed.
Besides the possibility to perform DNA-based analyses (e.g. microsatellite fingerprinting, DNA barcoding, metabarcoding and RAD-seq) directly on the invertebrates trapped or stored in PG, the samples seem suitable for a variety of research designs. Firstly, it has to be highlighted that PG-conserved specimens demonstrate a reduced shrinkage effect and specimens often remain appropriately conserved for morphological examinations (
There is currently only limited scientific literature on the use of PG for DNA-based analyses of invertebrates available, and even less so in the context of HTS. However, the investigated studies indicate that PG can be a versatile and worthwhile alternative for sample fixation (and potentially preservation) of various organism groups and in a range of methodological setups. Yet, generally valid statements about fixatives and preservatives are difficult to make (
Future studies which plan the application of PG should critically scrutinize their trapping, specimen and storage conditions. For how many days are traps deployed? How will humidity, precipitation, UV exposure and temperature conditions in the sampling area affect the fixative? Do the targeted organisms allow for an easy tissue penetration by the fixative (e.g. soft-bodied vs. sclerotinised specimens)? Can PG reduce hands-on times and yet overall costs (e.g. no sample transfer for shipping; no evaporation prior to DNA isolation) (see e.g.
The work is part of the EU COST Action CA15219 (“DNAqua-Net”). It was financially supported by the German Research Foundation (grant WE 6055/1-1) and the Bauer and Stemmler foundations program “FORSCHUNGSGEIST! Next Generation Sequencing in der Oekosystemforschung”.
Overview of DNA-based studies of invertebrates applying propylene glycol, sorted by year and taxonomic group
Data type: study counts
Explanation note: Overview of DNA-based studies of invertebrates applying propylene glycol, sorted by year and taxonomic group.