Recommendations for the preservation of environmental samples in diatom metabarcoding studies

Ana Baricevic; Cécile Chardon; Maria Kahlert; Satu Maaria Karjalainen; Daniela Maric Pfannkuchen; Martin Pfannkuchen; Frédéric Rimet; Mirta Smodlaka Tankovic; Rosa Trobajo; Valentin Vasselon; Jonas Zimmermann; Agnès Bouchez

doi:10.3897/mbmg.6.85844

Elena Kezlya, Natalia Tseplik, Maxim Kulikovskiy (2023)
Genetic Markers for Metabarcoding of Freshwater Microalgae: Review. Biology 12: 1038.

DOI: 10.3390/biology12071038

Jacqui Stuart, Ken G. Ryan, John K. Pearman, Jacob Thomson-Laing, Hannah G. Hampton, Kirsty F. Smith (2024)
A comparison of two gene regions for assessing community composition of eukaryotic marine microalgae from coastal ecosystems. Scientific Reports 14: .

DOI: 10.1038/s41598-024-56993-4

Clélia Duran, Christine Dupuy, Hélène Agogué, Robert Duran, Cristiana Cravo-Laureau (2025)
Towards a comprehensive view of wetland benthic communities. Current Research in Microbial Sciences 8: 100391.

DOI: 10.1016/j.crmicr.2025.100391

Lana Grižančić, Ana Baričević, Mirta Smodlaka Tanković, Ivan Vlašiček, Mia Knjaz, Ivan Podolšak, Tjaša Kogovšek, Martin Pfannkuchen, Daniela Marić Pfannkuchen (2023)
A metabarcode based (species) inventory of the northern Adriatic phytoplankton. Biodiversity Data Journal 11: .

DOI: 10.3897/BDJ.11.e106947

Aydın Kaleli, Gozde Ozbayram, Reyhan Akcaalan (2024)
Comparative Investigation of Marine Benthic Diatom Assemblages with Morphological and Metabarcoding Approaches Along the Coasts of Istanbul Metropolis. Estuaries and Coasts 47: 473.

DOI: 10.1007/s12237-023-01287-7

Alexis Canino, Clarisse Lemonnier, Benjamin Alric, Agnès Bouchez, Isabelle Domaizon, Christophe Laplace-Treyture, Frédéric Rimet (2023)
Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities. International Journal of Limnology 59: 8.

DOI: 10.1051/limn/2023008

Susanna Theroux, Adam Sepulveda, Cathryn L. Abbott, Zachary Gold, Alison W. Watts, Margaret E. Hunter, Katy E. Klymus, Shana Lee Hirsch, Joseph M. Craine, Devin N. Jones, Rachel J. Brown, Joshua A. Steele, Miwa Takahashi, Rachel T. Noble, John A. Darling (2025)
What is eDNA method standardisation and why do we need it?. Metabarcoding and Metagenomics 9: .

DOI: 10.3897/mbmg.9.132076

Valentin Vasselon, Sinziana F. Rivera, Éva Ács, Salomé F.P. Almeida, Karl B. Andree, Laure Apothéloz-Perret-Gentil, Bonnie Bailet, Ana Baričević, Kevin K. Beentjes, Juliane Bettig, Agnès Bouchez, Camilla Capelli, Cécile Chardon, Mónika Duleba, Tina Elersek, Clémence Genthon, Maša Jablonska, Louis Jacas, Maria Kahlert, Martyn G. Kelly, Jan-Niklas Macher, Federica Mauri, Marina Moletta-Denat, Andreia Mortágua, Jan Pawlowski, Javier Pérez-Burillo, Martin Pfannkuchen, Erik Pilgrim, Panayiota Pissaridou, Frédéric Rimet, Karmen Stanic, Kálmán Tapolczai, Susanna Theroux, Rosa Trobajo, Berry Van der Hoorn, Marlen I. Vasquez, Marie Vidal, David Wanless, Jonathan Warren, Jonas Zimmermann, Benoît Paix (2025)
Proficiency testing and cross-laboratory method comparison to support standardisation of diatom DNA metabarcoding for freshwater biomonitoring. Metabarcoding and Metagenomics 9: .

DOI: 10.3897/mbmg.9.133264

Jonas Bylemans, Didier Azam, Anne‐Laure Besnard, Simon Blanchet, Cecile Chardon, Gérard Lacroix, Leslie Laine, Stephen Mulero, Carine Puppo, Murielle Richard, Marine Vautier, Isabelle Domaizon (2025)
Laying Down the Foundations for Qualitative and Quantitative Freshwater Zooplankton Metabarcoding Surveys. Environmental DNA 7: .

DOI: 10.1002/edn3.70219

Houria Bouazzara, Rachid Chaibi (2025)
Diatoms and nanotechnology, current trends in nanomaterials applications and environmental monitoring. Environmental Monitoring and Assessment 197: .

DOI: 10.1007/s10661-025-14227-8

Yohann Graux, Marina Querejeta, Sabrina Gaba, Vincent Bretagnolle, Stéphane Boyer (2026)
Using historical samples to re-construct the predatory diet of carabid beetles through time. Basic and Applied Ecology 90: 22.

DOI: 10.1016/j.baae.2025.11.004

Nathan J. Smucker, Erik M. Pilgrim, Christopher T. Nietch, Charlie Carpenter (2025)
Freezing periphyton samples and storage duration do not affect the use of diatom DNA metabarcoding to determine effects of stressors on streams. Environmental Monitoring and Assessment 197: .

DOI: 10.1007/s10661-025-14753-5

Maria Mercedes Nicolosi Gelis, Raphaëlle Barry-Martinet, Jean-François Briand, Teofana Chonova, Joaquín Cochero, Gilles Gassiole, Maria Kahlert, Balasubramanian Karthick, François Keck, Martyn Kelly, Hristina Kochoska, David Mann, Pratyasha Nayak, Martin Pfannkuchen, Tobias Servulo, Rosa Trobajo, Valentin Vasselon, Danijela Vidakovic, Laurine Viollaz, Carlos Wetzel, Jonas Zimmermann, Frederic Rimet (2025)
Assigning taxonomy and traits to DNA sequences of river diatoms in a region with limited taxonomic knowledge using the updated and annotated reference library Diat.barcode. International Journal of Limnology 61: 10.

DOI: 10.1051/limn/2025009

Monica Șerban, Alin Croitoru (2022)
La pandemia de COVID-19 como oportunidad para poner de relieve la migración de los trabajadores agrícolas a través de la cobertura mediática. Estudios Geográficos 83: e111.

DOI: 10.3989/estgeogr.2022117.117

Jonathan Warren, Sean Butler, Nick Evens, Laura Hunt, Martyn Kelly, Lindsay Newbold, Daniel S. Read, Joe D. Taylor, Kerry Walsh (2024)
Influence of storage time on the stability of diatom assemblages using DNA from riverine biofilm samples. Metabarcoding and Metagenomics 8: .

DOI: 10.3897/mbmg.8.129227