Plankton biodiversity and species co-occurrence based on environmental DNA – a multiple marker study

Sirje Sildever; Peeter Laas; Natalja Kolesova; Inga Lips; Urmas Lips; Satoshi Nagai

doi:10.3897/mbmg.5.72371

Marina Potapova, Daiana Markarian, Abigail King, Laura Aycock (2024)
Microbial Eukaryotes in Natural and Artificial Salt Marsh Pools. Coasts 4: 287.

DOI: 10.3390/coasts4020015

Gonzalo Fuenzalida, Roland Sanchez, Andrea X. Silva, Alvaro Figueroa, Osvaldo Artal, Maria Fernanda Torres, Alejandro E. Montecinos, Milko Jorquera, Nicole Trefault, Oscar Espinoza-González, Leonardo Guzman (2025)
Patagonian Fjords/Channels vs. Open Ocean: Phytoplankton Molecular Diversity on Southern Chilean Coast. Microorganisms 13: 2746.

DOI: 10.3390/microorganisms13122746

Moritz S. Schmid, Su Sponaugle, Anne W. Thompson, Kelly R. Sutherland, Robert K. Cowen (2023)
Drivers of plankton community structure in intermittent and continuous coastal upwelling systems–from microbes and microscale in-situ imaging to large scale patterns. Frontiers in Marine Science 10: .

DOI: 10.3389/fmars.2023.1166629

Agneta Andersson, Li Zhao, Sonia Brugel, Daniela Figueroa, Siv Huseby (2023)
Metabarcoding vs Microscopy: Comparison of Methods To Monitor Phytoplankton Communities. ACS ES&T Water 3: 2671.

DOI: 10.1021/acsestwater.3c00176

Boobal Rangaswamy, Chang Woo Ji, Won-Seok Kim, Jae-Won Park, Yong Jun Kim, Ihn-Sil Kwak (2022)
Profiling Analysis of Filter Feeder Polypedilum (Chironomidae) Gut Contents Using eDNA Metabarcoding Following Contrasting Habitat Types—Weir and Stream. International Journal of Environmental Research and Public Health 19: 10945.

DOI: 10.3390/ijerph191710945

Ngoc-Loi Nguyen, Dhanushka Devendra, Natalia Szymańska, Justyna Falkowska, Mathis Noël Bernard, Marek Zajączkowski, Jan Pawłowski, Joanna Pawłowska (2026)
Multi-marker eDNA metabarcoding reveals significant eukaryotic biodiversity gaps in the Gulf of Gdańsk, Southeastern Baltic Sea. Frontiers in Marine Science 12: .

DOI: 10.3389/fmars.2025.1695900

Laura Biessy, John K. Pearman, Molly C. Hobson, Jacob Thomson-Laing, Kirsty F. Smith, Christopher M. Moy, Christina R. Riesselman, Greer Gilmer, Marcus J. Vandergoes, Rebecca McLeod, Susanna A. Wood (2025)
Detection of harmful algal species in a survey of eight near pristine fjords in Fiordland Marine Area, Aotearoa-New Zealand. Total Environment Microbiology 1: 100017.

DOI: 10.1016/j.temicr.2025.100017

Sirje Sildever, Noriko Nishi, Satoshi Tazawa, Hiromi Kasai, Junya Hirai, Akihiro Shiomoto, Taisei Kikuchi, Seiji Katakura, Satoshi Nagai (2023)
Eight years of weekly eDNA monitoring in the North‐Western Pacific. Environmental DNA 5: 1202.

DOI: 10.1002/edn3.452

Jiao Yang, Subha Bhassu, Ghazanfer Ali, Thenmoli Govindasamy, Muhamad Afiq Aziz, Arutchelvan Rajamanikam (2025)
Ecological Health and Freshwater Pathogen Using eDNA Metabarcoding: A Preliminary Assessment for Environmental Surveillance Development in Malaysia. Microorganisms 13: 2055.

DOI: 10.3390/microorganisms13092055

Soyun Choi, Eunkyung Choi, Minjoo Cho, Seung Jae Lee, Inseo Kim, Doyoon Shin, Jangyeon Kim, Hyoung Sul La, Jae-Sung Rhee, Jeong-Hoon Kim, Hyun Park (2025)
Metabarcoding analysis reveals hidden eukaryotic plankton biodiversity in the Ross Sea, Antarctica. PeerJ 13: e20118.

DOI: 10.7717/peerj.20118

Yingchao Li, Xianliang Huang, Haina Du, Xiangxiang Ding, Zhiyuan Gong, Po Teen Lim, Chui Pin Leaw, Nansheng Chen (2026)
Integrative single-cell sequencing and environmental metabarcoding reveals genetic complexity and hidden diversity of the dinoflagellate Tripos (Dinophyceae). Harmful Algae 158: 103166.

DOI: 10.1016/j.hal.2026.103166

Sirje Sildever, Noriko Nishi, Nobuharu Inaba, Taiga Asakura, Jun Kikuchi, Yasuhito Asano, Takanori Kobayashi, Takashi Gojobori, Satoshi Nagai (2022)
Monitoring harmful microalgal species and their appearance in Tokyo Bay, Japan, using metabarcoding. Metabarcoding and Metagenomics 6: .

DOI: 10.3897/mbmg.6.79471

Hye-Eun Kang, Tae-Ho Yoon, Jong-Woo Park, Weol-Ae Lim, Chang-Keun Kang, Hyun-Woo Kim (2022)
A Study on the Possibility of Early Warning for Cochlodinium polykrikoides Blooms, Using Molecular Methods. Water 14: 3115.

DOI: 10.3390/w14193115

Urban Tillmann, Nina Dzhembekova (2026)
Uncovering a new Scrippsiella species from the Black Sea: Scrippsiella phycobiana sp. nov. (Thoracosphaerales, Dinophyceae). Phycological Research 74: 299.

DOI: 10.1111/pre.70046

S. Sangeetha, Annam Pavan-Kumar, T. Ravikumar, P. Krishnan, P. Bipul, J. Shreya, P. Apurvasinh, A. Chaudhari (2026)
Environmental DNA Reveals Eukaryotic Diversity and Invasion Risks in Ballast Water Discharged in the Gulf of Mannar, India. National Academy Science Letters : .

DOI: 10.1007/s40009-026-02130-w

Hanna Mazur-Marzec, Anders F Andersson, Agata Błaszczyk, Przemysław Dąbek, Ewa Górecka, Michał Grabski, Katarzyna Jankowska, Agata Jurczak-Kurek, Anna K Kaczorowska, Tadeusz Kaczorowski, Bengt Karlson, Marija Kataržytė, Justyna Kobos, Ewa Kotlarska, Beata Krawczyk, Aneta Łuczkiewicz, Kasia Piwosz, Bartosz Rybak, Krzysztof Rychert, Conny Sjöqvist, Waldemar Surosz, Beata Szymczycha, Anna Toruńska-Sitarz, Grzegorz Węgrzyn, Andrzej Witkowski, Alicja Węgrzyn (2024)
Biodiversity of microorganisms in the Baltic Sea: the power of novel methods in the identification of marine microbes. FEMS Microbiology Reviews 48: .

DOI: 10.1093/femsre/fuae024

Onur Doğan, Anil Doğan Örün, Raşit Bilgin, Melek Isinibilir (2025)
Using eDNA metabarcoding to capture a snapshot of plankton community composition in the western Marmara Sea and northeastern Aegean Sea. Marine Biodiversity 55: .

DOI: 10.1007/s12526-025-01544-x