Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species

Till-Hendrik Macher; Robin Schütz; Jens Arle; Arne J. Beermann; Jan Koschorreck; Florian Leese

doi:10.3897/mbmg.5.66557

Armando Espinosa Prieto, Jean‐Nicolas Beisel, Pieternel Verschuren, Laurent Hardion (2023)
Toward freshwater plant diversity surveys with eDNA barcoding and metabarcoding. Environmental DNA 5: 648.

DOI: 10.1002/edn3.407

Kamil Hupało, Saskia Schmidt, Till-Hendrik Macher, Martina Weiss, Florian Leese (2022)
Fresh insights into Mediterranean biodiversity: environmental DNA reveals spatio-temporal patterns of stream invertebrate communities on Sicily. Hydrobiologia 849: 155.

DOI: 10.1007/s10750-021-04718-3

Shan Zhang, Jindong Zhao, Meng Yao (2023)
Urban landscape-level biodiversity assessments of aquatic and terrestrial vertebrates by environmental DNA metabarcoding. Journal of Environmental Management 340: 117971.

DOI: 10.1016/j.jenvman.2023.117971

Miwa Takahashi, Mattia Saccò, Joshua H. Kestel, Georgia Nester, Matthew A. Campbell, Mieke van der Heyde, Matthew J. Heydenrych, David J. Juszkiewicz, Paul Nevill, Kathryn L. Dawkins, Cindy Bessey, Kristen Fernandes, Haylea Miller, Matthew Power, Mahsa Mousavi-Derazmahalleh, Joshua P. Newton, Nicole E. White, Zoe T. Richards, Morten E. Allentoft (2023)
Aquatic environmental DNA: A review of the macro-organismal biomonitoring revolution. Science of The Total Environment 873: 162322.

DOI: 10.1016/j.scitotenv.2023.162322

Mandy Sander, Arne J. Beermann, Dominik Buchner, Iris Madge Pimentel, James S. Sinclair, Martina Weiss, Peter Haase, Florian Leese (2024)
Environmental DNA time series analysis of a temperate stream reveals distinct seasonal community and functional shifts. River Research and Applications : .

DOI: 10.1002/rra.4265

Lynsey R. Harper, Matthew L. Niemiller, Joseph B. Benito, Lauren E. Paddock, E. Knittle, Brenda Molano‐Flores, Mark A. Davis (2023)
BeeDNA: Microfluidic environmental DNA metabarcoding as a tool for connecting plant and pollinator communities. Environmental DNA 5: 191.

DOI: 10.1002/edn3.370

Holly A. Broadhurst, Luke M. Gregory, Emma K. Bleakley, Joseph C. Perkins, Jenna V. Lavin, Polly Bolton, Samuel S. Browett, Claire V. Howe, Natalie Singleton, Darren Tansley, Naiara Guimarães Sales, Allan D. McDevitt (2021)
Mapping differences in mammalian distributions and diversity using environmental DNA from rivers. Science of The Total Environment 801: 149724.

DOI: 10.1016/j.scitotenv.2021.149724

Camila Duarte Ritter, Giorgi Dal Pont, Paula Valeska Stica, Aline Horodesky, Nathieli Cozer, Otto Samuel Mäder Netto, Caroline Henn, Antonio Ostrensky, Marcio R. Pie (2022)
Wanted not, wasted not: Searching for non-target taxa in environmental DNA metabarcoding by-catch. Environmental Advances 7: 100169.

DOI: 10.1016/j.envadv.2022.100169

Rebecca K. Loh, Sujatha N. Kutty, Darren C. J. Yeo, Rudolf Meier (2023)
Toward eDNA‐based bioassessment of freshwater reservoirs with small volumes of water: Robust molecular protocols. Environmental DNA 5: 264.

DOI: 10.1002/edn3.373

Till-Hendrik Macher, Robin Schütz, Atakan Yildiz, Arne J. Beermann, Florian Leese (2023)
Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: .

DOI: 10.3897/mbmg.7.103856

Florian Altermatt, Luca Carraro, Manuel Antonetti, Camille Albouy, Yan Zhang, Arnaud Lyet, Xiaowei Zhang, Loïc Pellissier (2023)
Quantifying biodiversity using eDNA from water bodies: General principles and recommendations for sampling designs. Environmental DNA 5: 671.

DOI: 10.1002/edn3.430

Saima Naz, Ahmad Manan Mustafa Chatha, Rifat Ullah Khan (2023)
Pragmatic applications of DNA barcoding markers in identification of fish species – A review. Annals of Animal Science 23: 363.

DOI: 10.2478/aoas-2022-0073

S. Elizabeth Alter, Jairo Arroyave (2022)
Environmental DNA metabarcoding is a promising method for assaying fish diversity in cenotes of the Yucatán Peninsula, Mexico. Metabarcoding and Metagenomics 6: .

DOI: 10.3897/mbmg.6.89857

Jon-Ivar Westgaard, Kim Præbel, Per Arneberg, Brian P. Ulaski, Randi Ingvaldsen, Owen S. Wangensteen, Torild Johansen (2024)
Towards eDNA informed biodiversity studies – Comparing water derived molecular taxa with traditional survey methods. Progress in Oceanography 222: 103230.

DOI: 10.1016/j.pocean.2024.103230