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A comparison of biomonitoring methodologies for surf zone fish communities. PLOS ONE 18: e0260903.
DOI: 10.1371/journal.pone.0260903
Optimising species detection probability and sampling effort in lake fish eDNA surveys. Metabarcoding and Metagenomics 8: .
DOI: 10.3897/mbmg.8.104655
Answers blowing in the wind: Detection of birds, mammals, and amphibians with airborne environmental DNA in a natural environment over a yearlong survey. Environmental DNA 5: 375.
DOI: 10.1002/edn3.388
THAPBI PICT—a fast, cautious, and accurate metabarcoding analysis pipeline. PeerJ 11: e15648.
DOI: 10.7717/peerj.15648
Proving a negative: Estimating species ‘confidence in absence for decision‐making’ using environmental DNA monitoring. Journal of Applied Ecology 62: 2409.
DOI: 10.1111/1365-2664.70099
TaxonTableTools: A comprehensive, platform‐independent graphical user interface software to explore and visualise DNA metabarcoding data. Molecular Ecology Resources 21: 1705.
DOI: 10.1111/1755-0998.13358
Coastal eutrophication transforms shallow micro-benthic reef communities. Science of The Total Environment 961: 178252.
DOI: 10.1016/j.scitotenv.2024.178252
Signal and noise in metabarcoding data. PLOS ONE 18: e0285674.
DOI: 10.1371/journal.pone.0285674
European fish-based assessment reveals high diversity of systems for determining ecological status of lakes. Science of The Total Environment 802: 149620.
DOI: 10.1016/j.scitotenv.2021.149620
Bottom Trawling and Multi‐Marker eDNA Metabarcoding Surveys Reveal Highly Diverse Vertebrate and Crustacean Communities: A Case Study in an Urbanized Subtropical Estuary. Environmental DNA 6: .
DOI: 10.1002/edn3.70031
Detection differences between paired environmental DNA metabarcoding and midwater trawl surveys for fishes in the central Sea of Japan. Regional Studies in Marine Science 100: 105171.
DOI: 10.1016/j.rsma.2026.105171
Environmental DNA metabarcoding of invertebrate-incubated water enables WFD-compliant, animal-friendly bioassessment with additional trait insights. Limnologica 118: 126322.
DOI: 10.1016/j.limno.2026.126322
Land use characteristics affect the sub-basinal scale urban fish community identified by environmental DNA metabarcoding. Landscape and Ecological Engineering 20: 163.
DOI: 10.1007/s11355-023-00587-1
Metabarcoding outperforms traditional electrofishing in decapod and fish inventories, paving the way for enhanced biodiversity monitoring in the Caribbean. Metabarcoding and Metagenomics 9: .
DOI: 10.3897/mbmg.9.151675
Pragmatic applications of DNA barcoding markers in identification of fish species – A review. Annals of Animal Science 23: 363.
DOI: 10.2478/aoas-2022-0073
Expanding Monitoring Capacity for Potential Invasive Species in Arctic Canada With Environmental DNA Metabarcoding. Global Change Biology 31: .
DOI: 10.1111/gcb.70452
Fit for purpose? Evaluating benthic invertebrate DNA metabarcoding for ecological status class assessment in streams under the Water Framework Directive. Water Research 272: 122987.
DOI: 10.1016/j.watres.2024.122987
Navigating the Murky Waters: Variation in Low Abundance Sequence Filtration in Fish eDNA Metabarcoding. Environmental DNA 7: .
DOI: 10.1002/edn3.70106
Environmental DNA as a sentinel for climate-driven range shifts in cold-water fish: methodologies, applications, and conservation. Conservation Genetics Resources 18: .
DOI: 10.1007/s12686-026-01435-8
Seasonal Changes in Fish eDNA Signal Vary Between Contrasting River Types. Environmental DNA 7: .
DOI: 10.1002/edn3.70060
Evaluating environmental DNA metabarcoding as a survey tool for unionid mussel assessments. Freshwater Biology 67: 1483.
DOI: 10.1111/fwb.13955
Optimizing Environmental DNA Metabarcoding of Archived Suspended Particulate Matter for River Biodiversity Monitoring. Environmental DNA 7: .
DOI: 10.1002/edn3.70130
eDNA sampling reveals no evidence of negative effects of beaver recolonisation on the catchment‐scale distribution of migratory fish. Journal of Applied Ecology 63: .
DOI: 10.1111/1365-2664.70475
Investigating Fine‐Scale Breeding Habitat Use by Amphibians in a Continuous Wetland Using Environmental DNA. Environmental DNA 7: .
DOI: 10.1002/edn3.70063
Novel 12S/16S rRNA markers for quantitative metabarcoding of mammalian mixtures. Food Control 193: 112630.
DOI: 10.1016/j.foodcont.2026.112630
Potential for cross-contamination of diatom DNA samples when using toothbrushes. Metabarcoding and Metagenomics 5: .
DOI: 10.3897/mbmg.5.66503
Regional‐scale effects of deer‐induced forest degradation on river ecosystem dynamics. Population Ecology 66: 196.
DOI: 10.1002/1438-390X.12174
Multi‐tool monitoring: Integrating non‐invasive methods to assess vertebrate richness, functional diversity and trophic complexity. Ecological Solutions and Evidence 7: .
DOI: 10.1002/2688-8319.70308
Exploring the relationship between environmental DNA concentration and biomass in Asian giant softshell turtle (Pelochelys cantorii). PeerJ 11: e16218.
DOI: 10.7717/peerj.16218
Strategic eDNA metabarcoding sampling outperforms conventional monitoring methods and reveals spatial patterns of vertebrate biodiversity in a Mediterranean river basin. Water Biology and Security : 100715.
DOI: 10.1016/j.watbs.2026.100715
Monitoring of mammal and bird species in an urban ecological park using environmental DNA metabarcoding. Urban Ecosystems 27: 1891.
DOI: 10.1007/s11252-024-01557-7
Enabling Quantitative eDNA Monitoring in Lotic Ecosystems by Incorporating Hydrological Characteristics and Allometric Scaling. Freshwater Biology 71: .
DOI: 10.1111/fwb.70308
Cost-effort analysis of Baited Remote Underwater Video (BRUV) and environmental DNA (eDNA) in monitoring marine ecological communities. PeerJ 12: e17091.
DOI: 10.7717/peerj.17091
Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools. Frontiers in Ecology and the Environment 19: 574.
DOI: 10.1002/fee.2404
A large scale temporal and spatial environmental DNA biodiversity survey of marine vertebrates in Brazil following the Fundão tailings dam failure. Marine Environmental Research 192: 106239.
DOI: 10.1016/j.marenvres.2023.106239
Metabarcoding Analysis of Arthropod Pollinator Diversity: A Methodological Comparison of eDNA Derived From Flowers and DNA Derived From Bulk Samples of Insects. Molecular Ecology 34: .
DOI: 10.1111/mec.70003
Quantitative assessment of reef foraminifera community from metabarcoding data. Molecular Ecology Resources 24: .
DOI: 10.1111/1755-0998.14000
Applying Environmental DNA Metabarcoding to Calculate an Index of Biotic Integrity for Freshwater Fish. Environmental DNA 8: .
DOI: 10.1002/edn3.70251
Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward. Molecular Ecology 31: 5132.
DOI: 10.1111/mec.16659
Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes. PLOS ONE 17: e0272660.
DOI: 10.1371/journal.pone.0272660
Using eDNA Metabarcoding to Monitor Changes in Fish Community Composition After Barrier Removal. Frontiers in Ecology and Evolution 9: .
DOI: 10.3389/fevo.2021.629217
The Fish Behind Fish Feed: Rethinking Transparency Using DNA Tools. Fish and Fisheries 27: 771.
DOI: 10.1111/faf.70080
Airborne Environmental DNA for Moth Monitoring: Effectiveness, Challenges, and Complementarity With Traditional Methods. Environmental DNA 8: .
DOI: 10.1002/edn3.70335
Environmental DNA persistence and fish detection in captive sponges. Molecular Ecology Resources 22: 2956.
DOI: 10.1111/1755-0998.13677
The true picture of environmental DNA, a case study in harvested fishponds. Ecological Indicators 142: 109241.
DOI: 10.1016/j.ecolind.2022.109241
Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species. Metabarcoding and Metagenomics 5: .
DOI: 10.3897/mbmg.5.66557
Environmental DNA as a tool for hydropower impact assessments: current status, special considerations, and future integration. Biological Reviews 100: 2584.
DOI: 10.1111/brv.70059
Seeing through sedimented waters: environmental DNA reduces the phantom diversity of sharks and rays in turbid marine habitats. BMC Ecology and Evolution 21: .
DOI: 10.1186/s12862-021-01895-6
Reproduction influences seasonal eDNA variation in a temperate marine fish community. Limnology and Oceanography Letters 7: 443.
DOI: 10.1002/lol2.10271
Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods. Environmental DNA 3: 1247.
DOI: 10.1002/edn3.241
Hydrology-induced changes drive fish eDNA ecology in a neotropical reservoir. Hydrobiologia 853: 4365.
DOI: 10.1007/s10750-026-06231-x
Earthworm and enchytraeid indicator taxa of different land-use types identified using soil DNA metabarcoding. Applied Soil Ecology 206: 105891.
DOI: 10.1016/j.apsoil.2025.105891
Evaluating the quantitative performance of environmental DNA metabarcoding for freshwater zooplankton community: a case study in Lake Biwa, Japan. Environmental Science and Pollution Research 31: 58069.
DOI: 10.1007/s11356-024-35025-8
A distributed large‐volume soil sampling approach to address spatial heterogeneity in eDNA data collection. Methods in Ecology and Evolution 17: 1726.
DOI: 10.1111/2041-210x.70317
eDNA metabarcoding provides biodiversity estimates comparable to conventional sampling methods. Canadian Journal of Fisheries and Aquatic Sciences 83: 1.
DOI: 10.1139/cjfas-2024-0323
eDNA metabarcoding as a means to track distributions of different fish species in a protected area. Environmental DNA 6: .
DOI: 10.1002/edn3.505
Community Characteristics of Phytoplankton in Dongping Lake Revealed by eDNA and Implications for Water-Quality Assessment. Water 18: 839.
DOI: 10.3390/w18070839
NeMO: A Flexible R Package for Nested Multi‐Species Occupancy Modeling and eDNA Study Optimization. Environmental DNA 8: .
DOI: 10.1002/edn3.70326
Predicting trawl catches using environmental DNA. ICES Journal of Marine Science 81: 1536.
DOI: 10.1093/icesjms/fsae097
Utilizing aquatic environmental DNA to address global biodiversity targets. Nature Reviews Biodiversity 1: 332.
DOI: 10.1038/s44358-025-00044-x
High Replicability in Strong Correlation Between Goldfish Abundance, eDNA Detection Probability, and eDNA Concentration in Urban Ponds. Environmental DNA 8: .
DOI: 10.1002/edn3.70259
Unveiling the UNESCO Biosphere Reserve of the Berlengas Archipelago in Portugal as a Hotspot of Fish Species Using eDNA Metabarcoding and the Collaboration of Fishing Crews. Journal of Marine Science and Engineering 13: 60.
DOI: 10.3390/jmse13010060
Environmental DNA metabarcoding in the Cape Fold aquatic ecoregion: Opportunities and challenges for eDNA uptake in an endemism hotspot. Freshwater Biology 69: 1627.
DOI: 10.1111/fwb.14331
Quantitative monitoring of diverse fish communities on a large scale combining eDNA metabarcoding and qPCR. Molecular Ecology Resources 23: 396.
DOI: 10.1111/1755-0998.13715
Sucked in by eDNA – a promising tool for complementing riverine assessment of freshwater fish communities in Aotearoa New Zealand. New Zealand Journal of Zoology 48: 217.
DOI: 10.1080/03014223.2021.1905672
Bulk, water, and sediment eDNA metabarcoding reveal metric-driven differences in WFD macrozoobenthos ecological status classification in Slovakia. Metabarcoding and Metagenomics 10: .
DOI: 10.3897/mbmg.10.185694
Spatio‐temporal monitoring of lake fish spawning activity using environmental DNA metabarcoding. Environmental DNA 5: 849.
DOI: 10.1002/edn3.343
Integrating physiology and environmental dynamics to operationalize environmental DNA (eDNA) as a means to monitor freshwater macro‐organism abundance. Molecular Ecology 30: 6531.
DOI: 10.1111/mec.16202
Comparative analysis of fish environmental DNA reveals higher sensitivity achieved through targeted sequence‐based metabarcoding. Molecular Ecology Resources 23: 581.
DOI: 10.1111/1755-0998.13732
Relating target fish DNA concentration to community composition analysis in freshwater fish via metabarcoding. Science of The Total Environment 927: 172281.
DOI: 10.1016/j.scitotenv.2024.172281
Environmental DNA metabarcoding from flowers reveals arthropod pollinators, plant pests, parasites, and potential predator–prey interactions while revealing more arthropod diversity than camera traps. Environmental DNA 5: 551.
DOI: 10.1002/edn3.411
Environmental DNA captures native and non-native fish community variations across the lentic and lotic systems of a megacity. Science Advances 8: .
DOI: 10.1126/sciadv.abk0097
Non-destructive environmental DNA extracted from owl pellet contents: A valuable tool for monitoring mammalian species richness. PLOS One 21: e0344097.
DOI: 10.1371/journal.pone.0344097
Optimization and application of bacterial environmental DNA and RNA isolation for qualitative and quantitative studies. Environmental DNA 6: .
DOI: 10.1002/edn3.589
Fish diversity assessment through environmental DNA metabarcoding: a synthesis review of mock community studies. Reviews in Fish Biology and Fisheries 36: .
DOI: 10.1007/s11160-026-10040-9
Tails of Biodiversity: Vertebrate Community Assessment in a Neotropical River Basin via eDNA Metabarcoding. Environmental DNA 8: .
DOI: 10.1002/edn3.70230
Optimising eDNA analysis for urban otter monitoring: seasonal patterns, detection strategies and prey availability. Metabarcoding and Metagenomics 8: .
DOI: 10.3897/mbmg.8.115512
Quantitative prey species detection in predator guts across multiple trophic levels by mapping unassembled shotgun reads. Molecular Ecology Resources 23: 64.
DOI: 10.1111/1755-0998.13690
Dietary niche partitioning of three Sky Island Sceloporus lizards as revealed through DNA metabarcoding. Ecology and Evolution 13: .
DOI: 10.1002/ece3.10461
eDNA metabarcoding captures a decline of coral diversity at Taiping Island after an outbreak of Crown-of-Thorns starfish. Coral Reefs 43: 1687.
DOI: 10.1007/s00338-024-02566-w
Persisting at the Edge of Ecological Collapse: The Impact of Urbanization on Fish and Amphibian Communities From Lake Xochimilco. Environmental DNA 7: .
DOI: 10.1002/edn3.70147
Multitrophic responses to tidal marsh restoration: early effects of channel configuration on water quality, aquatic food web structure, and fish communities. Restoration Ecology : .
DOI: 10.1111/rec.70422
Wildlife Population Assessment: Changing Priorities Driven by Technological Advances. Journal of Statistical Theory and Practice 17: .
DOI: 10.1007/s42519-023-00319-6
A Comparative Study of iDNA and airDNA for Biodiversity Assessments in Tropical Forest Fragments. Environmental DNA 8: .
DOI: 10.1002/edn3.70285
Evaluating the potential of DNA metabarcoding for ecological status assessment under the Water Framework Directive: A case study on benthic invertebrates from Western Carpathian streams. Metabarcoding and Metagenomics 9: .
DOI: 10.3897/mbmg.9.163640
Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: .
DOI: 10.3897/mbmg.7.103856
Metropolitan pressures: Significant biodiversity declines and strong filtering of functional traits in fish assemblages. Science of The Total Environment 944: 173885.
DOI: 10.1016/j.scitotenv.2024.173885
Complementary molecular and visual sampling of fish on oil and gas platforms provides superior biodiversity characterisation. Marine Environmental Research 179: 105692.
DOI: 10.1016/j.marenvres.2022.105692
Predicting downstream transport distance of fish eDNA in lotic environments. Molecular Ecology Resources 24: .
DOI: 10.1111/1755-0998.13934
A manager’s guide to using eDNA metabarcoding in marine ecosystems. PeerJ 10: e14071.
DOI: 10.7717/peerj.14071
Evaluating eDNA metabarcoding for fish biodiversity assessment in Nigerian aquatic ecosystems: potential, limitations, and comparisons with traditional methods. Journal of Freshwater Ecology 40: .
DOI: 10.1080/02705060.2025.2541689
Exploring video and eDNA metabarcoding methods to assess oyster aquaculture cages as fish habitat. Aquaculture Environment Interactions 13: 277.
DOI: 10.3354/aei00408
High frequency environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics. Environmental DNA 5: 1623.
DOI: 10.1002/edn3.486
Testing small‐scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding. Molecular Ecology 30: 3355.
DOI: 10.1111/mec.15851
Optimization of environmental DNA analysis using pumped deep-sea water for the monitoring of fish biodiversity. Frontiers in Marine Science 9: .
DOI: 10.3389/fmars.2022.965800
Effect of fish biomass on environmental DNA shedding and degradation. Molecular Biology Reports 52: .
DOI: 10.1007/s11033-025-10991-5
Catch Me If You Can: Assessing Sampling Techniques for Threatened Floodplain Wetland Fish. Aquatic Conservation: Marine and Freshwater Ecosystems 36: .
DOI: 10.1002/aqc.70433
Monitoring oomycetes in water: combinations of methodologies used to answer key monitoring questions. Frontiers in Horticulture 2: .
DOI: 10.3389/fhort.2023.1210535
Enhancing Environmental DNA Sampling Efficiency for Cetacean Detection on Whale Watching Tours. Environmental DNA 7: .
DOI: 10.1002/edn3.70103
Using Environmental DNA to Detect Whales and Dolphins in the New York Bight. Frontiers in Conservation Science 3: .
DOI: 10.3389/fcosc.2022.820377
Environmental DNA metabarcoding reveals seasonal and spatial variation in the vertebrate fauna of Ilulissat Icefjord, Greenland. Marine Ecology Progress Series 706: 91.
DOI: 10.3354/meps14250
Unraveling Temporal Fish Diversity in a Neotropical Hydropower Reservoir: Comparing eDNA Metabarcoding to Traditional Fishing Methods. Environmental DNA 8: .
DOI: 10.1002/edn3.70278
Community eDNA metabarcoding as a detection tool for documenting freshwater mussel (Unionidae) species assemblages. Environmental DNA 3: 1172.
DOI: 10.1002/edn3.239
Integrating molecular approaches for standardised monitoring of North Sea biodiversity and ecosystem dynamics. BMC Marine Science 1: .
DOI: 10.1186/s44479-026-00009-w
Fish and Fisheries in Estuaries. : 874.
DOI: 10.1002/9781119705345.app1
Encyclopedia of Inland Waters. : 537.
DOI: 10.1016/B978-0-12-819166-8.00131-6
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