Research Article
Other versions:
- ContentsContents
- Article InfoArticle Info
- CiteCite
- MetricsMetrics
- CommentComment
- RelatedRelated
- FigsFigs
- TaxaTaxa
- DataData
- RefsRefs
- CitedCited
A comparison of biomonitoring methodologies for surf zone fish communities. PLOS ONE 18: e0260903.
DOI: 10.1371/journal.pone.0260903
Optimising species detection probability and sampling effort in lake fish eDNA surveys. Metabarcoding and Metagenomics 8: .
DOI: 10.3897/mbmg.8.104655
Answers blowing in the wind: Detection of birds, mammals, and amphibians with airborne environmental DNA in a natural environment over a yearlong survey. Environmental DNA 5: 375.
DOI: 10.1002/edn3.388
THAPBI PICT—a fast, cautious, and accurate metabarcoding analysis pipeline. PeerJ 11: e15648.
DOI: 10.7717/peerj.15648
Utilizing aquatic environmental DNA to address global biodiversity targets. Nature Reviews Biodiversity : .
DOI: 10.1038/s44358-025-00044-x
TaxonTableTools: A comprehensive, platform‐independent graphical user interface software to explore and visualise DNA metabarcoding data. Molecular Ecology Resources 21: 1705.
DOI: 10.1111/1755-0998.13358
Coastal eutrophication transforms shallow micro-benthic reef communities. Science of The Total Environment 961: 178252.
DOI: 10.1016/j.scitotenv.2024.178252
Signal and noise in metabarcoding data. PLOS ONE 18: e0285674.
DOI: 10.1371/journal.pone.0285674
Unveiling the UNESCO Biosphere Reserve of the Berlengas Archipelago in Portugal as a Hotspot of Fish Species Using eDNA Metabarcoding and the Collaboration of Fishing Crews. Journal of Marine Science and Engineering 13: 60.
DOI: 10.3390/jmse13010060
Environmental DNA metabarcoding in the Cape Fold aquatic ecoregion: Opportunities and challenges for eDNA uptake in an endemism hotspot. Freshwater Biology 69: 1627.
DOI: 10.1111/fwb.14331
European fish-based assessment reveals high diversity of systems for determining ecological status of lakes. Science of The Total Environment 802: 149620.
DOI: 10.1016/j.scitotenv.2021.149620
Quantitative monitoring of diverse fish communities on a large scale combining eDNA metabarcoding and qPCR. Molecular Ecology Resources 23: 396.
DOI: 10.1111/1755-0998.13715
Bottom Trawling and Multi‐Marker eDNA Metabarcoding Surveys Reveal Highly Diverse Vertebrate and Crustacean Communities: A Case Study in an Urbanized Subtropical Estuary. Environmental DNA 6: .
DOI: 10.1002/edn3.70031
Sucked in by eDNA – a promising tool for complementing riverine assessment of freshwater fish communities in Aotearoa New Zealand. New Zealand Journal of Zoology 48: 217.
DOI: 10.1080/03014223.2021.1905672
Land use characteristics affect the sub-basinal scale urban fish community identified by environmental DNA metabarcoding. Landscape and Ecological Engineering 20: 163.
DOI: 10.1007/s11355-023-00587-1
Pragmatic applications of DNA barcoding markers in identification of fish species – A review. Annals of Animal Science 23: 363.
DOI: 10.2478/aoas-2022-0073
Fit for purpose? Evaluating benthic invertebrate DNA metabarcoding for ecological status class assessment in streams under the Water Framework Directive. Water Research 272: 122987.
DOI: 10.1016/j.watres.2024.122987
Spatio‐temporal monitoring of lake fish spawning activity using environmental DNA metabarcoding. Environmental DNA 5: 849.
DOI: 10.1002/edn3.343
Integrating physiology and environmental dynamics to operationalize environmental DNA (eDNA) as a means to monitor freshwater macro‐organism abundance. Molecular Ecology 30: 6531.
DOI: 10.1111/mec.16202
Comparative analysis of fish environmental DNA reveals higher sensitivity achieved through targeted sequence‐based metabarcoding. Molecular Ecology Resources 23: 581.
DOI: 10.1111/1755-0998.13732
Relating target fish DNA concentration to community composition analysis in freshwater fish via metabarcoding. Science of The Total Environment 927: 172281.
DOI: 10.1016/j.scitotenv.2024.172281
Evaluating environmental DNA metabarcoding as a survey tool for unionid mussel assessments. Freshwater Biology 67: 1483.
DOI: 10.1111/fwb.13955
Environmental DNA metabarcoding from flowers reveals arthropod pollinators, plant pests, parasites, and potential predator–prey interactions while revealing more arthropod diversity than camera traps. Environmental DNA 5: 551.
DOI: 10.1002/edn3.411
Environmental DNA captures native and non-native fish community variations across the lentic and lotic systems of a megacity. Science Advances 8: .
DOI: 10.1126/sciadv.abk0097
Investigating Fine‐Scale Breeding Habitat Use by Amphibians in a Continuous Wetland Using Environmental DNA. Environmental DNA 7: .
DOI: 10.1002/edn3.70063
Potential for cross-contamination of diatom DNA samples when using toothbrushes. Metabarcoding and Metagenomics 5: .
DOI: 10.3897/mbmg.5.66503
Optimization and application of bacterial environmental DNA and RNA isolation for qualitative and quantitative studies. Environmental DNA 6: .
DOI: 10.1002/edn3.589
Regional‐scale effects of deer‐induced forest degradation on river ecosystem dynamics. Population Ecology 66: 196.
DOI: 10.1002/1438-390X.12174
Exploring the relationship between environmental DNA concentration and biomass in Asian giant softshell turtle (Pelochelys cantorii). PeerJ 11: e16218.
DOI: 10.7717/peerj.16218
Optimising eDNA analysis for urban otter monitoring: seasonal patterns, detection strategies and prey availability. Metabarcoding and Metagenomics 8: .
DOI: 10.3897/mbmg.8.115512
Quantitative prey species detection in predator guts across multiple trophic levels by mapping unassembled shotgun reads. Molecular Ecology Resources 23: 64.
DOI: 10.1111/1755-0998.13690
Monitoring of mammal and bird species in an urban ecological park using environmental DNA metabarcoding. Urban Ecosystems 27: 1891.
DOI: 10.1007/s11252-024-01557-7
Dietary niche partitioning of three Sky Island Sceloporus lizards as revealed through DNA metabarcoding. Ecology and Evolution 13: .
DOI: 10.1002/ece3.10461
Cost-effort analysis of Baited Remote Underwater Video (BRUV) and environmental DNA (eDNA) in monitoring marine ecological communities. PeerJ 12: e17091.
DOI: 10.7717/peerj.17091
eDNA metabarcoding captures a decline of coral diversity at Taiping Island after an outbreak of Crown-of-Thorns starfish. Coral Reefs 43: 1687.
DOI: 10.1007/s00338-024-02566-w
Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools. Frontiers in Ecology and the Environment 19: 574.
DOI: 10.1002/fee.2404
Wildlife Population Assessment: Changing Priorities Driven by Technological Advances. Journal of Statistical Theory and Practice 17: .
DOI: 10.1007/s42519-023-00319-6
A large scale temporal and spatial environmental DNA biodiversity survey of marine vertebrates in Brazil following the Fundão tailings dam failure. Marine Environmental Research 192: 106239.
DOI: 10.1016/j.marenvres.2023.106239
Quantitative assessment of reef foraminifera community from metabarcoding data. Molecular Ecology Resources 24: .
DOI: 10.1111/1755-0998.14000
Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: .
DOI: 10.3897/mbmg.7.103856
Metropolitan pressures: Significant biodiversity declines and strong filtering of functional traits in fish assemblages. Science of The Total Environment 944: 173885.
DOI: 10.1016/j.scitotenv.2024.173885
Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward. Molecular Ecology 31: 5132.
DOI: 10.1111/mec.16659
Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes. PLOS ONE 17: e0272660.
DOI: 10.1371/journal.pone.0272660
Using eDNA Metabarcoding to Monitor Changes in Fish Community Composition After Barrier Removal. Frontiers in Ecology and Evolution 9: .
DOI: 10.3389/fevo.2021.629217
Complementary molecular and visual sampling of fish on oil and gas platforms provides superior biodiversity characterisation. Marine Environmental Research 179: 105692.
DOI: 10.1016/j.marenvres.2022.105692
Predicting downstream transport distance of fish eDNA in lotic environments. Molecular Ecology Resources 24: .
DOI: 10.1111/1755-0998.13934
Environmental DNA persistence and fish detection in captive sponges. Molecular Ecology Resources 22: 2956.
DOI: 10.1111/1755-0998.13677
The true picture of environmental DNA, a case study in harvested fishponds. Ecological Indicators 142: 109241.
DOI: 10.1016/j.ecolind.2022.109241
Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species. Metabarcoding and Metagenomics 5: .
DOI: 10.3897/mbmg.5.66557
A manager’s guide to using eDNA metabarcoding in marine ecosystems. PeerJ 10: e14071.
DOI: 10.7717/peerj.14071
Exploring video and eDNA metabarcoding methods to assess oyster aquaculture cages as fish habitat. Aquaculture Environment Interactions 13: 277.
DOI: 10.3354/aei00408
Seeing through sedimented waters: environmental DNA reduces the phantom diversity of sharks and rays in turbid marine habitats. BMC Ecology and Evolution 21: .
DOI: 10.1186/s12862-021-01895-6
High frequency environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics. Environmental DNA 5: 1623.
DOI: 10.1002/edn3.486
Reproduction influences seasonal eDNA variation in a temperate marine fish community. Limnology and Oceanography Letters 7: 443.
DOI: 10.1002/lol2.10271
Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods. Environmental DNA 3: 1247.
DOI: 10.1002/edn3.241
Testing small‐scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding. Molecular Ecology 30: 3355.
DOI: 10.1111/mec.15851
Optimization of environmental DNA analysis using pumped deep-sea water for the monitoring of fish biodiversity. Frontiers in Marine Science 9: .
DOI: 10.3389/fmars.2022.965800
Earthworm and enchytraeid indicator taxa of different land-use types identified using soil DNA metabarcoding. Applied Soil Ecology 206: 105891.
DOI: 10.1016/j.apsoil.2025.105891
Monitoring oomycetes in water: combinations of methodologies used to answer key monitoring questions. Frontiers in Horticulture 2: .
DOI: 10.3389/fhort.2023.1210535
Using Environmental DNA to Detect Whales and Dolphins in the New York Bight. Frontiers in Conservation Science 3: .
DOI: 10.3389/fcosc.2022.820377
Evaluating the quantitative performance of environmental DNA metabarcoding for freshwater zooplankton community: a case study in Lake Biwa, Japan. Environmental Science and Pollution Research 31: 58069.
DOI: 10.1007/s11356-024-35025-8
Environmental DNA metabarcoding reveals seasonal and spatial variation in the vertebrate fauna of Ilulissat Icefjord, Greenland. Marine Ecology Progress Series 706: 91.
DOI: 10.3354/meps14250
eDNA metabarcoding as a means to track distributions of different fish species in a protected area. Environmental DNA 6: .
DOI: 10.1002/edn3.505
Community eDNA metabarcoding as a detection tool for documenting freshwater mussel (Unionidae) species assemblages. Environmental DNA 3: 1172.
DOI: 10.1002/edn3.239
Predicting trawl catches using environmental DNA. ICES Journal of Marine Science 81: 1536.
DOI: 10.1093/icesjms/fsae097
Fish and Fisheries in Estuaries. : 874.
DOI: 10.1002/9781119705345.app1
Encyclopedia of Inland Waters. : 537.
DOI: 10.1016/B978-0-12-819166-8.00131-6
Subscribe to email alerts for current Article's categories