Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos

Vera Marie Alida Zizka; Martina Weiss; Florian Leese

doi:10.3897/mbmg.4.51925

Kevin Weitemier, Brooke E. Penaluna, Laura L. Hauck, Lucas J. Longway, Tiffany Garcia, Richard Cronn (2021)
Estimating the genetic diversity of Pacific salmon and trout using multigene eDNA metabarcoding. Molecular Ecology 30: 4970.

DOI: 10.1111/mec.15811

Javier Pérez-Burillo, Rosa Trobajo, Manel Leira, François Keck, Frédéric Rimet, Javier Sigró, David G. Mann (2021)
DNA metabarcoding reveals differences in distribution patterns and ecological preferences among genetic variants within some key freshwater diatom species. Science of The Total Environment 798: 149029.

DOI: 10.1016/j.scitotenv.2021.149029

Adrià Antich, Creu Palacín, Xavier Turon, Owen S. Wangensteen (2022)
DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets. PeerJ 10: e12758.

DOI: 10.7717/peerj.12758

Miaolian Zhang, Yingtong Zou, Shan Xiao, Jing Hou (2023)
Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications, challenges and prospects. Marine Pollution Bulletin 194: 115430.

DOI: 10.1016/j.marpolbul.2023.115430

Peter Shum, Stephen R. Palumbi (2021)
Testing small‐scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding. Molecular Ecology 30: 3355.

DOI: 10.1111/mec.15851

Janina Schenk, Sebastian Höss, Nils Kleinbölting, Walter Traunspurger (2022)
Suitability of molecular taxonomy for assessing polluted sediments using the NemaSPEAR[%] index. Ecological Indicators 137: 108761.

DOI: 10.1016/j.ecolind.2022.108761

A. Laini, R. Stubbington, A. J. Beermann, G. Burgazzi, T. Datry, P. Viaroli, M. Wilkes, V. M. A. Zizka, M. Saccò, F. Leese (2023)
Dissecting biodiversity: assessing the taxonomic, functional and phylogenetic structure of an insect metacommunity in a river network using morphological and metabarcoding data. The European Zoological Journal 90: 320.

DOI: 10.1080/24750263.2023.2197924

Kamil Hupało, Saskia Schmidt, Till-Hendrik Macher, Martina Weiss, Florian Leese (2022)
Fresh insights into Mediterranean biodiversity: environmental DNA reveals spatio-temporal patterns of stream invertebrate communities on Sicily. Hydrobiologia 849: 155.

DOI: 10.1007/s10750-021-04718-3

Leho Tedersoo, Mohammad Bahram, Lucie Zinger, R. Henrik Nilsson, Peter G. Kennedy, Teng Yang, Sten Anslan, Vladimir Mikryukov (2022)
Best practices in metabarcoding of fungi: From experimental design to results. Molecular Ecology 31: 2769.

DOI: 10.1111/mec.16460

Adrià Antich, Creu Palacín, Jesús Zarcero, Owen Simon Wangensteen, Xavier Turon (2023)
Metabarcoding reveals high‐resolution biogeographical and metaphylogeographical patterns through marine barriers. Journal of Biogeography 50: 515.

DOI: 10.1111/jbi.14548

Víctor Noguerales, Emmanouil Meramveliotakis, Adrián Castro‐Insua, Carmelo Andújar, Paula Arribas, Thomas J. Creedy, Isaac Overcast, Hélène Morlon, Brent C. Emerson, Alfried P. Vogler, Anna Papadopoulou (2023)
Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a mosaic of montane forests. Molecular Ecology 32: 6110.

DOI: 10.1111/mec.16275

Roel van Klink, Tom August, Yves Bas, Paul Bodesheim, Aletta Bonn, Frode Fossøy, Toke T. Høye, Eelke Jongejans, Myles H.M. Menz, Andreia Miraldo, Tomas Roslin, Helen E. Roy, Ireneusz Ruczyński, Dmitry Schigel, Livia Schäffler, Julie K. Sheard, Cecilie Svenningsen, Georg F. Tschan, Jana Wäldchen, Vera M.A. Zizka, Jens Åström, Diana E. Bowler (2022)
Emerging technologies revolutionise insect ecology and monitoring. Trends in Ecology & Evolution 37: 872.

DOI: 10.1016/j.tree.2022.06.001

Mads Reinholdt Jensen, Eva Egelyng Sigsgaard, Sune Agersnap, Jes Jessen Rasmussen, Annette Baattrup‐Pedersen, Peter Wiberg‐Larsen, Philip Francis Thomsen (2021)
Seasonal turnover in community composition of stream‐associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding. Environmental DNA 3: 861.

DOI: 10.1002/edn3.193

Vera M. A. Zizka, Jan Koschorreck, Collins C. Khan, Jonas J. Astrin (2022)
Long-term archival of environmental samples empowers biodiversity monitoring and ecological research. Environmental Sciences Europe 34: .

DOI: 10.1186/s12302-022-00618-y

Alexander Zizka, Christopher D. Barratt, Camila Duarte Ritter, Theresa Joerger‐Hickfang, Vera M. A. Zizka (2022)
Existing approaches and future directions to link macroecology, macroevolution and conservation prioritization. Ecography 2022: .

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Joeselle M. Serrana, Kozo Watanabe, Claudia Isabella Pogoreutz (2023)
Haplotype-level metabarcoding of freshwater macroinvertebrate species: A prospective tool for population genetic analysis. PLOS ONE 18: e0289056.

DOI: 10.1371/journal.pone.0289056