Research Article
Metabarcoding and Metagenomics 3: e36408
https://doi.org/10.3897/mbmg.3.36408 (06 Nov 2019)
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  • ContentsContents
  • Article InfoArticle Info
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  • Article title
  • Abstract
  • Key Words
  • Introduction
  • Materials and methods
    • Sample extraction and microscopy
    • Mock community
    • Taxonomy assignment
  • Results
    • Single specimens
    • Sequence reads from mock community
    • Merged reads and sequence quality
    • Reference database coverage
    • Taxonomy assignment via utax
    • Taxonomy assignment via BLAST search against the NCBI Nucleotide Database
    • Taxonomy assignment using phylogenetic analyses
    • Taxonomic coverage
    • Read frequencies and abundance (number of individuals)
  • Discussion
  • Conclusions
  • Acknowledgements
  • References
  • Data accessibility
  • Supplementary materials
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