Peggy Heine, Jonas Hausen, Richard Ottermanns, Martina Roß-Nickoll (2021)
Comparing eDNA metabarcoding with morphological analyses: Fungal species richness and community composition of differently managed stages along a forest conversion of Norway spruce towards European beech in Germany.
Forest Ecology and Management496: 119429.
DOI: 10.1016/j.foreco.2021.119429
Indunil C. Senanayake, Dhandevi Pem, Achala R. Rathnayaka, Subodini N. Wijesinghe, Saowaluck Tibpromma, Dhanushka N. Wanasinghe, Rungtiwa Phookamsak, Nuwan D. Kularathnage, Deecksha Gomdola, Dulanjalee Harishchandra, Lakmali S. Dissanayake, Mei-mei Xiang, Anusha H. Ekanayaka, Eric H. C. McKenzie, Kevin D. Hyde, Hao-xing Zhang, Ning Xie (2022)
Predicting global numbers of teleomorphic ascomycetes.
Fungal Diversity114: 237.
DOI: 10.1007/s13225-022-00498-w
Shunsuke Matsuoka, Yoriko Sugiyama, Yoshito Shimono, Masayuki Ushio, Hideyuki Doi (2021)
Evaluation of seasonal dynamics of fungal DNA assemblages in a flow‐regulated stream in a restored forest using eDNA metabarcoding.
Environmental Microbiology23: 4797.
DOI: 10.1111/1462-2920.15669
Shota Masumoto, Ryo Kitagawa, Ryo Kaneko, Keita Nishizawa, Shunsuke Matsuoka, Masaki Uchida, Akira S Mori (2023)
Discrepancies of fungi and plants in the pattern of beta-diversity with environmental gradient imply a comprehensive community assembly rule.
FEMS Microbiology Ecology99: .
DOI: 10.1093/femsec/fiac157
Haile Yang, Hao Du, Hongfang Qi, Luxian Yu, Xindong Hou, Hui Zhang, Junyi Li, Jinming Wu, Chengyou Wang, Qiong Zhou, Qiwei Wei (2021)
Effectiveness assessment of using riverine water eDNA to simultaneously monitor the riverine and riparian biodiversity information.
Scientific Reports11: .
DOI: 10.1038/s41598-021-03733-7
Leho Tedersoo, Mohammad Bahram, Lucie Zinger, R. Henrik Nilsson, Peter G. Kennedy, Teng Yang, Sten Anslan, Vladimir Mikryukov (2022)
Best practices in metabarcoding of fungi: From experimental design to results.
Molecular Ecology31: 2769.
DOI: 10.1111/mec.16460
Yoriko Sugiyama, Shunsuke Matsuoka, Yoshito Shimono, Masayuki Ushio, Hideyuki Doi (2024)
Do aquatic fungal environmental DNA assemblages reflect the surrounding terrestrial sporocarp communities?.
Fungal Ecology67: 101311.
DOI: 10.1016/j.funeco.2023.101311
Noriko Uchida, Kengo Kubota, Shunsuke Aita, So Kazama (2020)
Aquatic insect community structure revealed by eDNA metabarcoding derives indices for environmental assessment.
PeerJ8: e9176.
DOI: 10.7717/peerj.9176
Shota Masumoto, Ryo Kitagawa, Keita Nishizawa, Takashi Osono, Motohiro Hasegawa, Yasuo Iimura, Shunsuke Matsuoka, Ryo Kaneko, Masaki Uchida, Akira S. Mori (2021)
Integrative assessment of the effects of shrub coverage on soil respiration in a tundra ecosystem.
Polar Science27: 100562.
DOI: 10.1016/j.polar.2020.100562
Corinne Biderre‐Petit, Jean‐Christophe Charvy, Gisèle Bronner, Marina Chauvet, Didier Debroas, Hélène Gardon, Claire Hennequin, Isabelle Jouan‐Dufournel, Anne Moné, Arthur Monjot, Viviane Ravet, Agnès Vellet, Cécile Lepère (2023)
FreshOmics: A manually curated and standardized –omics database for investigating freshwater microbiomes.
Molecular Ecology Resources23: 222.
DOI: 10.1111/1755-0998.13692
Aki Tanaka, Izumi Katano, Hideyuki Doi, Mami Iguchi, Shohei Koike (2023)
Applicability of environmental DNA metabarcoding for the hyporheic zone of a stream bed.
Environmental DNA5: 1667.
DOI: 10.1002/edn3.484
Shota Masumoto, Ryo Kitagawa, Keita Nishizawa, Ryo Kaneko, Takashi Osono, Motohiro Hasegawa, Shunsuke Matsuoka, Masaki Uchida, Akira S Mori (2021)
Functionally explicit partitioning of plant β-diversity reveal soil fungal assembly in the subarctic tundra.
FEMS Microbiology Ecology97: .
DOI: 10.1093/femsec/fiab129
Shunsuke Matsuoka, Hideyuki Doi, Shota Masumoto, Ryo Kitagawa, Keita Nishizawa, Kaho Tanaka, Motohiro Hasegawa, Satoru Hobara, Takashi Osono, Akira S. Mori, Masaki Uchida (2021)
Taxonomic, functional, and phylogenetic diversity of fungi in a forest-tundra ecotone in Québec.
Polar Science27: 100594.
DOI: 10.1016/j.polar.2020.100594
Lauren Cortez French, Michelle A. Jusino, Randolph M. Chambers, James Skelton (2024)
Community structure and functional diversity of aquatic fungi are correlated with water quality: Insights from multi‐marker analysis of environmental DNA in a coastal watershed.
Environmental DNA6: .
DOI: 10.1002/edn3.576
Danielle Machado Pagani, Stefânia P. R. Ventura, Duong Vu, Thairine Mendes-Pereira, Luiz Marcelo Ribeiro Tomé, Daniel Santana de Carvalho, Diogo Henrique Costa-Rezende, Rodrigo Bentes Kato, Glen Jasper Yupanqui García, József Geml, Vincent Robert, Ng Haig They, Bertram Brenig, Vasco Azevedo, Maria Lúcia Scroferneker, Patricia Valente, Aristóteles Góes-Neto (2023)
Unveiling Fungal Community Structure along Different Levels of Anthropic Disturbance in a South American Subtropical Lagoon.
Journal of Fungi9: 890.
DOI: 10.3390/jof9090890
Shunsuke Matsuoka, Yoriko Sugiyama, Mariko Nagano, Hideyuki Doi (2022)
Influence of DNA extraction kits on freshwater fungal DNA metabarcoding.
PeerJ10: e13477.
DOI: 10.7717/peerj.13477
Andrea Čačković, Katarina Kajan, Lorena Selak, Tamara Marković, Andrijana Brozičević, Petra Pjevac, Sandi Orlić, Michael J. Imperiale (2023)
Hydrochemical and Seasonally Conditioned Changes of Microbial Communities in the Tufa-Forming Freshwater Network Ecosystem.
mSphere8: .
DOI: 10.1128/msphere.00602-22