Paula Arribas, Carmelo Andújar, Martin I. Bidartondo, Kristine Bohmann, Éric Coissac, Simon Creer, Jeremy R. deWaard, Vasco Elbrecht, Gentile F. Ficetola, Marta Goberna, Susan Kennedy, Henrik Krehenwinkel, Florian Leese, Vojtech Novotny, Fredrik Ronquist, Douglas W. Yu, Lucie Zinger, Thomas J. Creedy, Emmanouil Meramveliotakis, Víctor Noguerales, Isaac Overcast, Hélène Morlon, Alfried P. Vogler, Anna Papadopoulou, Brent C. Emerson (2021)
Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis.
Molecular Ecology30: 1120.
DOI: 10.1111/mec.15797
Xihan Li, Feilong Li, Xingyue Min, Yuwei Xie, Yuan Zhang (2023)
Embracing eDNA and machine learning for taxonomy-free microorganisms biomonitoring to assess the river ecological status.
Ecological Indicators155: 110948.
DOI: 10.1016/j.ecolind.2023.110948
Sinziana F. Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet, Agnès Bouchez (2021)
Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: Test on macroinvertebrate communities in rivers.
Science of The Total Environment763: 144208.
DOI: 10.1016/j.scitotenv.2020.144208
Till‐Hendrik Macher, Arne J. Beermann, Florian Leese (2021)
TaxonTableTools: A comprehensive, platform‐independent graphical user interface software to explore and visualise DNA metabarcoding data.
Molecular Ecology Resources21: 1705.
DOI: 10.1111/1755-0998.13358
Kevin K. Beentjes, Arjen G. C. L. Speksnijder, Menno Schilthuizen, Marten Hoogeveen, Rob Pastoor, Berry B. van der Hoorn, Sebastian D. Fugmann (2019)
Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting.
PLOS ONE14: e0226527.
DOI: 10.1371/journal.pone.0226527
Elvira Mächler, Jean‐Claude Walser, Florian Altermatt (2021)
Decision‐making and best practices for taxonomy‐free environmental DNA metabarcoding in biomonitoring using Hill numbers.
Molecular Ecology30: 3326.
DOI: 10.1111/mec.15725
Maurizio Pinna, Benedetta Saccomanno, Gabriele Marini, Francesco Zangaro, Akbota Kabayeva, Mina Khalaj, Laura Shaimardan, Simona D’Attis, Eftychia Tzafesta, Valeria Specchia (2021)
Testing the Influence of Incomplete DNA Barcode Libraries on Ecological Status Assessment of Mediterranean Transitional Waters.
Biology10: 1092.
DOI: 10.3390/biology10111092
Vera Marie Alida Zizka , Martina Weiss, Florian Leese (2020)
Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos.
Metabarcoding and Metagenomics4: .
DOI: 10.3897/mbmg.4.51925
Stephanie D. Jurburg, Petr Keil, Brajesh K. Singh, Jonathan M. Chase (2021)
All together now: Limitations and recommendations for the simultaneous analysis of all eukaryotic soil sequences.
Molecular Ecology Resources21: 1759.
DOI: 10.1111/1755-0998.13401
A. Bush, Z. Compson, N. K. Rideout, B. Levenstein, M. Kattilakoski, M. Hajibabaei, W. A. Monk, M. T. G. Wright, D. J. Baird (2023)
Replicate DNA metabarcoding can discriminate seasonal and spatial abundance shifts in river macroinvertebrate assemblages.
Molecular Ecology Resources23: 1275.
DOI: 10.1111/1755-0998.13794
Tiedo van Kuijk, Jacobus C. Biesmeijer, Berry B. van der Hoorn, Piet F. M. Verdonschot (2021)
Functional traits explain crayfish invasive success in the Netherlands.
Scientific Reports11: .
DOI: 10.1038/s41598-021-82302-4
Gea H. van der Lee, Marcel Polling, Iris van der Laan, Linda Kodde, Ralf C.M. Verdonschot (2024)
From DNA to diagnostics: A case study using macroinvertebrate metabarcoding to assess the effectiveness of restoration measures in a Dutch stream.
Science of The Total Environment923: 171413.
DOI: 10.1016/j.scitotenv.2024.171413
Vera M.A. Zizka, Matthias F. Geiger, Florian Leese (2020)
DNA metabarcoding of stream invertebrates reveals spatio-temporal variation but consistent status class assessments in a natural and urban river.
Ecological Indicators115: 106383.
DOI: 10.1016/j.ecolind.2020.106383
Cátia Lúcio Pereira, M. Thomas P. Gilbert, Miguel Bastos Araújo, Miguel Graça Matias (2021)
Fine‐tuning biodiversity assessments: A framework to pair eDNA metabarcoding and morphological approaches.
Methods in Ecology and Evolution12: 2397.
DOI: 10.1111/2041-210X.13718
Dominik Buchner, Arne J. Beermann, Alex Laini, Peter Rolauffs, Simon Vitecek, Daniel Hering, Florian Leese, Fabrizio Frontalini (2019)
Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data.
PLOS ONE14: e0226547.
DOI: 10.1371/journal.pone.0226547
Rosetta Blackman, Elvira Mächler, Florian Altermatt, Amanda Arnold, Pedro Beja, Pieter Boets, Bastian Egeter, Vasco Elbrecht, Ana Filipa Filipe, John Jones, Jan Macher, Markus Majaneva, Filipa Martins, Cesc Múrria, Kristian Meissner, Jan Pawlowski, Paul Schmidt Yáñez, Vera Zizka, Florian Leese, Benjamin Price, Kristy Deiner (2019)
Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring – the need for calibration experiments.
Metabarcoding and Metagenomics3: .
DOI: 10.3897/mbmg.3.34735
M.E. Shackleton, K.A. Dafforn, N.P. Murphy, P. Greenfield, M. Cassidy, C.H. Besley (2021)
How does molecular taxonomy for deriving river health indices correlate with traditional morphological taxonomy?.
Ecological Indicators125: 107537.
DOI: 10.1016/j.ecolind.2021.107537
Álvaro Fueyo, Omar Sánchez, Carlos Carleos, Javier Granero‐Castro, Yaisel J. Borrell (2025)
Technical challenges in the implementation of macroinvertebrate DNA metabarcoding in river biomonitoring: A case study from peninsular Spain—Advantages, limitations and roadmap.
Ecological Solutions and Evidence6: .
DOI: 10.1002/2688-8319.70125
Alex Bush, Zacchaeus G. Compson, Wendy A. Monk, Teresita M. Porter, Royce Steeves, Erik Emilson, Nellie Gagne, Mehrdad Hajibabaei, Mélanie Roy, Donald J. Baird (2019)
Studying Ecosystems With DNA Metabarcoding: Lessons From Biomonitoring of Aquatic Macroinvertebrates.
Frontiers in Ecology and Evolution7: .
DOI: 10.3389/fevo.2019.00434
Subscribe to email alerts for current Article's categories