BBI: an R package for the computation of Benthic Biotic Indices from composition data

Tristan Cordier; Jan Pawlowski

doi:10.3897/mbmg.2.25649

R Package

Metabarcoding and Metagenomics 2: e25649
https://doi.org/10.3897/mbmg.2.25649 (05 Jul 2018)

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Jon T. Hestetun, Anders Lanzén, Thomas G. Dahlgren (2021)
Grab what you can—an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding. PeerJ 9: e11619.

DOI: 10.7717/peerj.11619

Anders Lanzén, Thomas G. Dahlgren, Andrea Bagi, Jon Thomassen Hestetun (2021)
Benthic eDNA metabarcoding provides accurate assessments of impact from oil extraction, and ecological insights. Ecological Indicators 130: 108064.

DOI: 10.1016/j.ecolind.2021.108064

Tristan Cordier, Fabrizio Frontalini, Kristina Cermakova, Laure Apothéloz-Perret-Gentil, Mauro Treglia, Enrico Scantamburlo, Vladimiro Bonamin, Jan Pawlowski (2019)
Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy). Marine Environmental Research 146: 24.

DOI: 10.1016/j.marenvres.2018.12.009

Yoann Dufresne, Franck Lejzerowicz, Laure Apotheloz Perret-Gentil, Jan Pawlowski, Tristan Cordier (2019)
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data. BMC Bioinformatics 20: .

DOI: 10.1186/s12859-019-2663-2

Florian Mauffrey, Tristan Cordier, Laure Apothéloz‐Perret‐Gentil, Kristina Cermakova, Thomas Merzi, Matthieu Delefosse, Philippe Blanc, Jan Pawlowski (2021)
Benthic monitoring of oil and gas offshore platforms in the North Sea using environmental DNA metabarcoding. Molecular Ecology 30: 3007.

DOI: 10.1111/mec.15698

Tristan Cordier, Dominik Forster, Yoann Dufresne, Catarina I. M. Martins, Thorsten Stoeck, Jan Pawlowski (2018)
Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring. Molecular Ecology Resources 18: 1381.

DOI: 10.1111/1755-0998.12926

Adrià Antich, Cruz Palacín, Emma Cebrian, Raül Golo, Owen S. Wangensteen, Xavier Turon (2021)
Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?. Molecular Ecology 30: 3175.

DOI: 10.1111/mec.15641

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