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Metabarcoding and Metagenomics 2: e24556
https://doi.org/10.3897/mbmg.2.24556 (05 Jul 2018)
https://doi.org/10.3897/mbmg.2.24556 (05 Jul 2018)
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Optimized DNA isolation from marine sponges for natural sampler DNA metabarcoding. Environmental DNA 5: 438.
DOI: 10.1002/edn3.392
Invasive terrestrial invertebrate detection in water and soil using a targeted eDNA approach. NeoBiota 83: 71.
DOI: 10.3897/neobiota.83.98898
Environmental DNA persistence and fish detection in captive sponges. Molecular Ecology Resources 22: 2956.
DOI: 10.1111/1755-0998.13677
Metabarcoding advances agricultural invertebrate biomonitoring by enhancing resolution, increasing throughput and facilitating network inference. Agricultural and Forest Entomology 27: 50.
DOI: 10.1111/afe.12628
Exploring intertidal sea anemones Actinia equina as natural eDNA samplers for coastal biodiversity assessment. Marine Ecology Progress Series 743: 159.
DOI: 10.3354/meps14650
Universal closed-tube barcoding for monitoring the shark and ray trade in megadiverse conservation hotspots. iScience 26: 107065.
DOI: 10.1016/j.isci.2023.107065
Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds. Hydrobiologia 826: 25.
DOI: 10.1007/s10750-018-3750-5
A practical guide to DNA metabarcoding for entomological ecologists. Ecological Entomology 45: 373.
DOI: 10.1111/een.12831
All is fish that comes to the net: metabarcoding for rapid fisheries catch assessment. Ecological Applications 31: .
DOI: 10.1002/eap.2273
Environmental DNA metabarcoding uncovers environmental correlates of fish communities in spatially heterogeneous freshwater habitats. Ecological Indicators 126: 107698.
DOI: 10.1016/j.ecolind.2021.107698
Estuarine molecular bycatch as a landscape-wide biomonitoring tool. Biological Conservation 261: 109287.
DOI: 10.1016/j.biocon.2021.109287
Net gain: Low‐cost, trawl‐associated eDNA samplers upscale ecological assessment of marine demersal communities. Environmental DNA 6: .
DOI: 10.1002/edn3.389
The Next Generation of Microbial Ecology and Its Importance in Environmental Sustainability. Microbial Ecology 85: 781.
DOI: 10.1007/s00248-023-02185-y
Assessment of Fish Species Biodiversity in the Yong River Basin Based on Environmental DNA Metabarcoding. Diversity 17: 35.
DOI: 10.3390/d17010035
Genetic consequences of improved river connectivity in brown trout (Salmo trutta L.). Evolutionary Applications 17: .
DOI: 10.1111/eva.13660
Spatio‐temporal monitoring of lake fish spawning activity using environmental DNA metabarcoding. Environmental DNA 5: 849.
DOI: 10.1002/edn3.343
La reconnaissance des espèces basée sur l’ADN : applications, perspectives et défisen milieu continental terrestre . Naturae 2024: .
DOI: 10.5852/naturae2024a3
Molecular detection of giant snakeheads, Channa micropeltes (Cuvier, 1831), one of the most troublesome fish species. Scientific Reports 11: .
DOI: 10.1038/s41598-021-89320-2
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods. GigaScience 11: .
DOI: 10.1093/gigascience/giac065
Coupling remote sensing and eDNA to monitor environmental impact: A pilot to quantify the environmental benefits of sustainable agriculture in the Brazilian Amazon. PLOS ONE 19: e0289437.
DOI: 10.1371/journal.pone.0289437
Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: .
DOI: 10.3897/mbmg.7.86883
One size does not fit all: Tuning eDNA protocols for high‐ and low‐turbidity water sampling. Environmental DNA 4: 167.
DOI: 10.1002/edn3.235
Mismanagement and poor transparency in the European processed seafood supply revealed by DNA metabarcoding. Food Research International 194: 114901.
DOI: 10.1016/j.foodres.2024.114901
A practical guide to sample preservation and pre‐PCR processing of aquatic environmental DNA. Molecular Ecology Resources 20: 29.
DOI: 10.1111/1755-0998.13107
Environmental DNA metabarcoding for fish diversity assessment in a macrotidal estuary: A comparison with established fish survey methods. Estuarine, Coastal and Shelf Science 294: 108522.
DOI: 10.1016/j.ecss.2023.108522
Mink on the brink: comparing survey methods for detecting a critically endangered carnivore, the European mink Mustela lutreola. European Journal of Wildlife Research 69: .
DOI: 10.1007/s10344-023-01657-3
Environmental DNA is effective in detecting the federally threatened Louisiana Pinesnake (Pituophis ruthveni). Environmental DNA 3: 409.
DOI: 10.1002/edn3.126
Integrating environmental DNA monitoring to inform eel (Anguilla anguilla) status in freshwaters at their easternmost range—A case study in Cyprus. Ecology and Evolution 13: .
DOI: 10.1002/ece3.9800
Assessing soil capacity and condition for “habitat of biodiversity” in the Lower Namoi Valley. Soil Security 15: 100152.
DOI: 10.1016/j.soisec.2024.100152
Identification of individual root-knot nematodes using low coverage long-read sequencing. PLOS ONE 16: e0253248.
DOI: 10.1371/journal.pone.0253248
Mapping differences in mammalian distributions and diversity using environmental DNA from rivers. Science of The Total Environment 801: 149724.
DOI: 10.1016/j.scitotenv.2021.149724
Assessment of dinoflagellate diversity using DNA metabarcoding reveals toxic dinoflagellate species in Australian coastal waters. Marine Pollution Bulletin 210: 117319.
DOI: 10.1016/j.marpolbul.2024.117319
Genotype But Not Body Shape Predicts River Migration Success in Atlantic Salmon. Ecology and Evolution 14: .
DOI: 10.1002/ece3.70682
Validation of COI metabarcoding primers for terrestrial arthropods. PeerJ 7: e7745.
DOI: 10.7717/peerj.7745
Temporal and Spatial eDNA Analysis of Fish Assemblages in Postindustrial, Urban Coastal Habitats. Environmental DNA 6: .
DOI: 10.1002/edn3.70043
Development and application of environmental DNA surveillance for the threatened crucian carp (Carassius carassius). Freshwater Biology 64: 93.
DOI: 10.1111/fwb.13197
Environmental DNA (eDNA) metabarcoding of pond water as a tool to survey conservation and management priority mammals. Biological Conservation 238: 108225.
DOI: 10.1016/j.biocon.2019.108225
Shark‐dust: Application of high‐throughput DNA sequencing of processing residues for trade monitoring of threatened sharks and rays. Conservation Letters 16: .
DOI: 10.1111/conl.12971
Cropping diminished the prevalence and soil-driven variability of rare bacterial communities in surface soils of the lower Namoi Valley, Australia. Applied Soil Ecology 196: 105304.
DOI: 10.1016/j.apsoil.2024.105304
DNA metabarcoding reveals the dietary profiles of a benthic marine crustacean, Nephrops norvegicus. PLOS ONE 18: e0289221.
DOI: 10.1371/journal.pone.0289221
Internal transcribed spacer primer evaluation for vascular plant metabarcoding. Metabarcoding and Metagenomics 5: .
DOI: 10.3897/mbmg.5.68155
Biofouling sponges as natural eDNA samplers for marine vertebrate biodiversity monitoring. Science of The Total Environment 946: 174148.
DOI: 10.1016/j.scitotenv.2024.174148
Using DNA metabarcoding to investigate diet and niche partitioning in the native European otter (Lutra lutra) and invasive American mink (Neovison vison). Metabarcoding and Metagenomics 4: .
DOI: 10.3897/mbmg.4.56087
DNA metabarcoding of trawling bycatch reveals diversity and distribution patterns of sharks and rays in the central Tyrrhenian Sea. ICES Journal of Marine Science 80: 664.
DOI: 10.1093/icesjms/fsad022
Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds. Metabarcoding and Metagenomics 4: .
DOI: 10.3897/mbmg.4.56959
The true picture of environmental DNA, a case study in harvested fishponds. Ecological Indicators 142: 109241.
DOI: 10.1016/j.ecolind.2022.109241
Comparison of soil eDNA to camera traps for assessing mammal and bird community composition and site use. Ecology and Evolution 14: .
DOI: 10.1002/ece3.70022
Optimising species detection probability and sampling effort in lake fish eDNA surveys. Metabarcoding and Metagenomics 8: .
DOI: 10.3897/mbmg.8.104655
Marine Genomics. Chapter 11: 225.
DOI: 10.1007/978-1-0716-2313-8_11
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