Beibei Chen, Wu Xiong, Jiejun Qi, Haibo Pan, Shi Chen, Ziheng Peng, Hang Gao, Limei Zhang, Yuji Jiang, Gehong Wei, Shuo Jiao (2021)
Trophic interrelationships drive the biogeography of protistan community in agricultural ecosystems.
Soil Biology and Biochemistry163: 108445.
DOI: 10.1016/j.soilbio.2021.108445
Guillaume Lentendu, Paulo Roberto Bressan Buosi, Adalgisa Fernada Cabral, Bianca Trevizan Segóvia, Bianca Ramos Meira, Fernando Miranda Lansac‐Tôha, Luiz Felipe Machado Velho, Camila D. Ritter, Micah Dunthorn (2019)
Protist Biodiversity and Biogeography in Lakes From Four Brazilian River–Floodplain Systems.
Journal of Eukaryotic Microbiology66: 592.
DOI: 10.1111/jeu.12703
Christina Bock, Michaela Salcher, Manfred Jensen, Ram Vinay Pandey, Jens Boenigk (2018)
Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes.
Frontiers in Microbiology9: .
DOI: 10.3389/fmicb.2018.01290
Ewa PrzyboŚ, Sebastian Tarcz (2019)
Global molecular variation of Paramecium jenningsi complex (Ciliophora, Protista): a starting point for further, detailed biogeography surveys.
Systematics and Biodiversity17: 527.
DOI: 10.1080/14772000.2019.1643424
Anna Busch, Sebastian Hess (2022)
A diverse group of underappreciated zygnematophytes deserves in-depth exploration.
Applied Phycology3: 306.
DOI: 10.1080/26388081.2022.2081819
Theodor Sperlea, Jan Philip Schenk, Hagen Dreßler, Daniela Beisser, Georges Hattab, Jens Boenigk, Dominik Heider (2022)
The relationship between land cover and microbial community composition in European lakes.
Science of The Total Environment825: 153732.
DOI: 10.1016/j.scitotenv.2022.153732
Theodor Sperlea, Stefan Füser, Jens Boenigk, Dominik Heider (2018)
SEDE-GPS: socio-economic data enrichment based on GPS information.
BMC Bioinformatics19: .
DOI: 10.1186/s12859-018-2419-4
Corinne Biderre‐Petit, Jean‐Christophe Charvy, Gisèle Bronner, Marina Chauvet, Didier Debroas, Hélène Gardon, Claire Hennequin, Isabelle Jouan‐Dufournel, Anne Moné, Arthur Monjot, Viviane Ravet, Agnès Vellet, Cécile Lepère (2023)
FreshOmics: A manually curated and standardized –omics database for investigating freshwater microbiomes.
Molecular Ecology Resources23: 222.
DOI: 10.1111/1755-0998.13692
Janina C. Vogt, Jana L. Olefeld, Christina Bock, Jens Boenigk, Dirk C. Albach (2021)
Patterns of protist distribution and diversification in alpine lakes across Europe.
MicrobiologyOpen10: .
DOI: 10.1002/mbo3.1216
Jeeva Susan Abraham, Sripoorna Somasundaram, Swati Maurya, Utkarsh Sood, Rup Lal, Ravi Toteja, Seema Makhija (2024)
Insights into freshwater ciliate diversity through high throughput DNA metabarcoding.
FEMS Microbes5: .
DOI: 10.1093/femsmc/xtae003
Pavel Škaloud, Magda Škaloudová, Pavla Doskočilová, Jong Im Kim, Woonghi Shin, Petr Dvořák (2019)
Speciation in protists: Spatial and ecological divergence processes cause rapid species diversification in a freshwater chrysophyte.
Molecular Ecology28: 1084.
DOI: 10.1111/mec.15011
E. S. Gusev, E. E. Guseva, Tran Duc Dien, M. S. Kulikovskiy (2022)
Flora of Silica-Scaled Chrysophytes (Chrysophyceae) of Two Provinces in Southern Vietnam.
Inland Water Biology15: 205.
DOI: 10.1134/S1995082922030063
Álmos Becz, Júlia Katalin Török (2023)
Life history of Apocarchesium arndti Norf & Foissner, 2010 (Ciliophora, Peritrichia) including recognition of a novel type of zooid.
European Journal of Protistology91: 126022.
DOI: 10.1016/j.ejop.2023.126022
Evgeniy S. Gusev, Tatiana V. Safronova, Yulia А. Podunay, Hoan Tran, Nikita A. Martynenko (2024)
Hidden diversity in the
Mallomonas pseudomatvienkoae
species complex (Synurales, Chrysophyceae) and description of two new species
.
Phycologia63: 544.
DOI: 10.1080/00318884.2024.2430034
Jie Li, Lingqing Wang, Bo Wu, Jianjun Wang, Yajing Yu, Yakov Kuzyakov, Shiming Ding, Xingliang Xu (2025)
Convergence and divergence of microbial communities in river- Qinghai lake sediment continuum on Tibetan Plateau.
Water Research282: 123757.
DOI: 10.1016/j.watres.2025.123757
Haihan Zhang, Zhenfang Zhao, Shengnan Chen, Yue Wang, Ji Feng, Jingyu Jia, Pengliang Kang, Sulin Li (2018)
Geographical patterns of denitrifying bacterial communities associated with different urban lakes.
RSC Advances8: 17079.
DOI: 10.1039/C8RA01295D
Hai Doan-Nhu, Tran Thi Tinh, E. S. Gusev, M. S. Kulikovskiy, Luom Phan-Tan, Lam Nguyen-Ngoc (2021)
Taxonomic Composition of Silica-Scaled Chrysophytes in a Tropical Mountain Reservoir.
Inland Water Biology14: 490.
DOI: 10.1134/S1995082921050060
Elena Kezlya, Dmitry Kapustin, Zinaida Krivova, Yevhen Maltsev, Lam Nguyen-Ngoc, Duyen Thi Ngoc Huynh, Hai Doan-Nhu, Maxim Kulikovskiy (2025)
Comprehensive analysis of the diatom genus Psammodictyon from Viet Nam: new species, molecular data, and fatty acid content.
Frontiers in Microbiology16: .
DOI: 10.3389/fmicb.2025.1701605
Rebecca E. Garner, Susanne A. Kraemer, Vera E. Onana, Yannick Huot, Irene Gregory-Eaves, David A. Walsh, Ashley Shade (2022)
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale.
mSystems7: .
DOI: 10.1128/msystems.00316-22
Elena N. Patova, Evgeniy S. Gusev, Julia N. Shabalina, Irina V. Novakovskaya, Michail D. Sivkov (2023)
Diversity of diatoms in biological soil crusts of the northern region of the Urals on the basis of morphological and metagenomic approaches.
Issues of modern algology (Вопросы современной альгологии)
: 58.
DOI: 10.33624/2311-0147-2023-2(32)-58-59
Stephan Majda, Jens Boenigk, Daniela Beisser, John Archibald (2019)
Intraspecific Variation in Protists: Clues for Microevolution from Poteriospumella lacustris (Chrysophyceae).
Genome Biology and Evolution11: 2492.
DOI: 10.1093/gbe/evz171
M. V. Umanskaya, M. Yu. Gorbunov, S. V. Bykova, N. G. Tarasova (2023)
Diversity and Transformation of the Community of Planktonic Freshwater Protists in the Estuarine Tributary Zone of a Large Plainland Reservoir: Metabarcoding of the 18S Ribosomal RNA Gene.
Biology Bulletin50: 707.
DOI: 10.1134/S1062359022602804
Julia K. Nuy, Matthias Hoetzinger, Martin W. Hahn, Daniela Beisser, Jens Boenigk (2020)
Ecological Differentiation in Two Major Freshwater Bacterial Taxa Along Environmental Gradients.
Frontiers in Microbiology11: .
DOI: 10.3389/fmicb.2020.00154
Wenbo Wang, Yufeng Yang, Zongbin Cui, Mianrun Chen, Xiao Ma, Qing Wang (2023)
High diversity and strong habitat preference of bdelloid rotifers in the moss and leaf litter from a small area of urban plain and adjacent hill in China.
Biodiversity and Conservation32: 2769.
DOI: 10.1007/s10531-023-02630-x
P. V. Kulizin, N. A. Martynenko, E. S. Gusev, D. A. Kapustin, E. L. Vodeneeva, M. S. Kulikovskiy (2022)
New Species of the Genus Cryptomonas (Cryptophyceae) in the Flora of Russia.
Inland Water Biology15: 227.
DOI: 10.1134/S1995082922030087
Erik Zschaubitz, Henning Schröder, Conor Christopher Glackin, Lukas Vogel, Matthias Labrenz, Theodor Sperlea (2025)
A benchmark analysis of feature selection and machine learning methods for environmental metabarcoding datasets.
Computational and Structural Biotechnology Journal27: 1636.
DOI: 10.1016/j.csbj.2025.04.017
Alicia S. Arroyo, David López-Escardó, Eunsoo Kim, Iñaki Ruiz-Trillo, Sebastián R. Najle (2018)
Novel Diversity of Deeply Branching Holomycota and Unicellular Holozoans Revealed by Metabarcoding in Middle Paraná River, Argentina.
Frontiers in Ecology and Evolution6: .
DOI: 10.3389/fevo.2018.00099
Daniela Frantal, Sabine Agatha, Daniela Beisser, Jens Boenigk, Tatyana Darienko, Gianna Dirren-Pitsch, Sabine Filker, Michael Gruber, Barbara Kammerlander, Laura Nachbaur, Ulrike Scheffel, Thorsten Stoeck, Kuimei Qian, Birgit Weißenbacher, Thomas Pröschold, Bettina Sonntag (2022)
Molecular Data Reveal a Cryptic Diversity in the Genus Urotricha (Alveolata, Ciliophora, Prostomatida), a Key Player in Freshwater Lakes, With Remarks on Morphology, Food Preferences, and Distribution.
Frontiers in Microbiology12: .
DOI: 10.3389/fmicb.2021.787290
Andrey I. Azovsky, Elena S. Chertoprud, Lesya A. Garlitska, Yuri A. Mazei, Denis V. Tikhonenkov (2020)
Does size really matter in biogeography? Patterns and drivers of global distribution of marine micro‐ and meiofauna.
Journal of Biogeography47: 1180.
DOI: 10.1111/jbi.13771
Kadeem J. Gilbert, Leonora S. Bittleston, Mark Arcebal K. Naive, Anthony E. Kiszewski, Perry Archival C. Buenavente, David J. Lohman, Naomi E. Pierce (2020)
Investigation of an Elevational Gradient Reveals Strong Differences Between Bacterial and Eukaryotic Communities Coinhabiting Nepenthes Phytotelmata.
Microbial Ecology80: 334.
DOI: 10.1007/s00248-020-01503-y
David Singer, Christophe V.W. Seppey, Guillaume Lentendu, Micah Dunthorn, David Bass, Lassâad Belbahri, Quentin Blandenier, Didier Debroas, G. Arjen de Groot, Colomban de Vargas, Isabelle Domaizon, Clément Duckert, Irina Izaguirre, Isabelle Koenig, Gabriela Mataloni, M. Romina Schiaffino, Edward A.D. Mitchell, Stefan Geisen, Enrique Lara (2021)
Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems.
Environment International146: 106262.
DOI: 10.1016/j.envint.2020.106262
Eveline Pinseel, Koen Sabbe, Elie Verleyen, Wim Vyverman (2024)
A New Dawn for Protist Biogeography.
Global Ecology and Biogeography33: .
DOI: 10.1111/geb.13925
Anna Müller, Marina Stark, Sophia Schottenhammel, Uwe John, Juliana Chacón, Andreas Klingl, Victoria Julia Christine Holzer, Marika Schöffer, Marc Gottschling (2024)
The second most abundant dinophyte in the ponds of a botanical garden is a species new to science.
Journal of Eukaryotic Microbiology71: .
DOI: 10.1111/jeu.13015
Christina Bock, Jana L. Olefeld, Janina C. Vogt, Dirk C. Albach, Jens Boenigk (2022)
Phylogenetic and functional diversity of Chrysophyceae in inland waters.
Organisms Diversity & Evolution22: 327.
DOI: 10.1007/s13127-022-00554-y
Yvonne Nemcova, Jana Faturova, Pavel Škaloud (2023)
Comparing continental and local distribution patterns of protists: A case study of silica-scaled chrysophytes.
Fottea23: 177.
DOI: 10.5507/fot.2022.022
Pavel Škaloud, Magda Škaloudová, Iva Jadrná, Helena Bestová, Martin Pusztai, Dmitry Kapustin, Peter A. Siver, T. Mock (2020)
Comparing Morphological and Molecular Estimates of Species Diversity in the Freshwater Genus Synura (Stramenopiles): A Model for Understanding Diversity of Eukaryotic Microorganisms.
Journal of Phycology56: 574.
DOI: 10.1111/jpy.12978
Paula Villa Martín, Anzhelika Koldaeva, Simone Pigolotti (2022)
Coalescent dynamics of planktonic communities.
Physical Review E106: .
DOI: 10.1103/PhysRevE.106.044408
Guillaume Lentendu, Frédéric Mahé, David Bass, Sonja Rueckert, Thorsten Stoeck, Micah Dunthorn (2018)
Consistent patterns of high alpha and low beta diversity in tropical parasitic and free‐living protists.
Molecular Ecology27: 2846.
DOI: 10.1111/mec.14731
Tobias Pietsch, Hartmut Arndt (2024)
Comparison of mixotrophic and heterotrophic chrysomonads of similar size regarding bacterivory and growth rate.
European Journal of Protistology95: 126109.
DOI: 10.1016/j.ejop.2024.126109
Anna Bessudova, Yurij Bukin, Yelena Likhoshway (2021)
Dispersal of Silica-Scaled Chrysophytes in Northern Water Bodies.
Diversity13: 284.
DOI: 10.3390/d13070284
Nikita Martynenko, Evgeniy Gusev, Dmitry Kapustin, Maxim Kulikovskiy (2022)
A New Cryptic Species of the Genus Mychonastes (Chlorophyceae, Sphaeropleales).
Plants11: 3363.
DOI: 10.3390/plants11233363
Konstantina Mitsi, Daniel J. Richter, Alicia S. Arroyo, David López-Escardó, Meritxell Antó, Antonio Guillén Oterino, Iñaki Ruiz-Trillo (2023)
Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding.
Scientific Reports13: .
DOI: 10.1038/s41598-023-30228-4
Evgeniy Gusev, Nikita Martynenko, Pavel Kulizin, Maxim Kulikovskiy (2022)
Molecular diversity of the genus Cryptomonas (Cryptophyceae) in Russia.
European Journal of Phycology57: 526.
DOI: 10.1080/09670262.2022.2031304
Rubén González‐Miguéns, Emilio Cano, Antonio Guillén‐Oterino, Antonio Quesada, Daniel J. G. Lahr, Daniel Tenorio‐Rodríguez, David de Salvador‐Velasco, David Velázquez, María Isabel Carrasco‐Braganza, R. Timothy Patterson, Enrique Lara, David Singer (2023)
A needle in a haystack: A new metabarcoding approach to survey diversity at the species level of Arcellinida (Amoebozoa: Tubulinea).
Molecular Ecology Resources23: 1034.
DOI: 10.1111/1755-0998.13771
Theodor Sperlea, Nico Kreuder, Daniela Beisser, Georges Hattab, Jens Boenigk, Dominik Heider (2021)
Quantification of the covariation of lake microbiomes and environmental variables using a machine learning‐based framework.
Molecular Ecology30: 2131.
DOI: 10.1111/mec.15872
Keshu Zou, Ruili Wang, Shannan Xu, Zhuoying Li, Li Liu, Min Li, Lei Zhou (2021)
Changes in protist communities in drainages across the Pearl River Delta under anthropogenic influence.
Water Research200: 117294.
DOI: 10.1016/j.watres.2021.117294
Elena Kezlya, Natalia Tseplik, Maxim Kulikovskiy (2023)
Genetic Markers for Metabarcoding of Freshwater Microalgae: Review.
Biology12: 1038.
DOI: 10.3390/biology12071038
Natalia Gumińska, Maja Łukomska‐Kowalczyk, Katarzyna Chaber, Bożena Zakryś, Rafał Milanowski (2021)
Evaluation of V2 18S rDNA barcode marker and assessment of sample collection and DNA extraction methods for metabarcoding of autotrophic euglenids.
Environmental Microbiology23: 2992.
DOI: 10.1111/1462-2920.15495
Aleix Obiol, Javier del Campo, Colomban de Vargas, Frédéric Mahé, Ramon Massana (2024)
How marine are Marine Stramenopiles (MAST)? A cross-system evaluation.
FEMS Microbiology Ecology100: .
DOI: 10.1093/femsec/fiae130
Elena Patova, Irina Novakovskaya, Evgeniy Gusev, Nikita Martynenko (2023)
Diversity of Cyanobacteria and Algae in Biological Soil Crusts of the Northern Ural Mountain Region Assessed through Morphological and Metabarcoding Approaches.
Diversity15: 1080.
DOI: 10.3390/d15101080
Michał Karlicki, Anna Bednarska, Paweł Hałakuc, Kacper Maciszewski, Anna Karnkowska (2024)
Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning.
FEMS Microbiology Ecology100: .
DOI: 10.1093/femsec/fiae104
Sofia C Macingo, Konstantinos A Kormas, Andreas Oikonomou, Hera Karayanni (2019)
Taxa–area and distance–decay relationships of unicellular eukaryotes along an elevation gradient of mountainous freshwater ecosystems.
Journal of Plankton Research41: 821.
DOI: 10.1093/plankt/fbz066
Jana L. Olefeld, Christina Bock, Manfred Jensen, Janina C. Vogt, Guido Sieber, Dirk Albach, Jens Boenigk (2020)
Centers of endemism of freshwater protists deviate from pattern of taxon richness on a continental scale.
Scientific Reports10: .
DOI: 10.1038/s41598-020-71332-z
Guillaume Lentendu, Micah Dunthorn, Janne Soininen (2021)
Phylogenetic relatedness drives protist assembly in marine and terrestrial environments.
Global Ecology and Biogeography30: 1532.
DOI: 10.1111/geb.13317
Manan Shah, Till L. V. Bornemann, Julia K. Nuy, Martin W. Hahn, Alexander J. Probst, Daniela Beisser, Jens Boenigk (2024)
Genome‐resolved metagenomics reveals the effect of nutrient availability on bacterial genomic properties across 44 European freshwater lakes.
Environmental Microbiology26: .
DOI: 10.1111/1462-2920.16634
G. Sieber, D. Beisser, C. Bock, J. Boenigk (2020)
Protistan and fungal diversity in soils and freshwater lakes are substantially different.
Scientific Reports10: .
DOI: 10.1038/s41598-020-77045-7
Wanting Pang, Bart Van de Vijver, Han Wu, Yanling Li (2022)
New chrysophyte stomatocysts from high mountain lakes in Three Parallel Rivers of Yunnan Protected Areas, China.
Fottea22: 228.
DOI: 10.5507/fot.2022.004
Vanessa Carvalho da Silva, Noemi Fernandes (2023)
Protist taxonomic and functional diversity in aquatic ecosystems of the Brazilian Atlantic Forest.
PeerJ11: e15762.
DOI: 10.7717/peerj.15762
M. V. Umanskaya, M. Yu. Gorbunov, S. V. Bykova, N. G. Tarasova (2023)
Diversity and Transformation of the Freshwater Planktonic Protist Community Along the Estuarine Tributary Zone of the Large Plainland Reservoir: 18S RRNA Gene Metabarkoding.
Известия Российской академии наук. Серия биологическая
: 426.
DOI: 10.31857/S102634702260039X
Melissa R. Ingala, Irena E. Werner, Allison M. Fitzgerald, Eugenia Naro-Maciel (2021)
18S rRNA amplicon sequence data (V1–V3) of the Bronx river estuary, New York.
Metabarcoding and Metagenomics5: .
DOI: 10.3897/mbmg.5.69691
Micaela Kersey, Mihaela D. Enache, Nicholas A. Procopio, Patrick Burritt, Marina Potapova (2025)
Protistan assemblages in natural and man-made intermittent ponds of the New Jersey Pinelands.
Hydrobiologia
: .
DOI: 10.1007/s10750-025-06008-8
Christina Bock, Manfred Jensen, Dominik Forster, Sabina Marks, Julia Nuy, Roland Psenner, Daniela Beisser, Jens Boenigk (2020)
Factors shaping community patterns of protists and bacteria on a European scale.
Environmental Microbiology22: 2243.
DOI: 10.1111/1462-2920.14992
Shuyin Huang, Guillaume Lentendu, Junichi Fujinuma, Takayuki Shiono, Yasuhiro Kubota, Edward A. D. Mitchell (2023)
Soil Micro-eukaryotic Diversity Patterns Along Elevation Gradient Are Best Estimated by Increasing the Number of Elevation Steps Rather than Within Elevation Band Replication.
Microbial Ecology86: 2606.
DOI: 10.1007/s00248-023-02259-x
Bettina Sonntag, Daniela Frantal, Barbara Kammerlander, Tatyana Darienko, Sabine Filker, Thorsten Stoeck, Michael Gruber, Thomas Pröschold (2022)
Widespread Occurrence of Two Planktonic Ciliate Species (Urotricha, Prostomatida) Originating from High Mountain Lakes.
Diversity14: 362.
DOI: 10.3390/d14050362
Pavel Škaloud, Iva Jadrná, Petr Dvořák, Zuzana Škvorová, Martin Pusztai, Dora Čertnerová, Helena Bestová, Karin Rengefors (2024)
Rapid diversification of a free-living protist is driven by adaptation to climate and habitat.
Current Biology34: 92.
DOI: 10.1016/j.cub.2023.11.046
Nikita A. Martynenko, Evgeniy S. Gusev, Irina N. Sterlyagova, Maxim S. Kulikovskiy (2022)
Revealing hidden diversity in theCryptomonas erosaclade (Cryptophyceae), with the description of two new species from acidic habitats.
Phycologia61: 184.
DOI: 10.1080/00318884.2022.2025727
Paula Villa Martín, Aleš Buček, Thomas Bourguignon, Simone Pigolotti (2020)
Ocean currents promote rare species diversity in protists.
Science Advances6: .
DOI: 10.1126/sciadv.aaz9037
Janina C. Vogt, Raeid M. M. Abed, Dirk C. Albach, Katarzyna A. Palinska, Jean-François Humbert (2019)
Latitudinal gradient of cyanobacterial diversity in tidal flats.
PLOS ONE14: e0224444.
DOI: 10.1371/journal.pone.0224444
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