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Article title
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Abstract
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Key words
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Introduction
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Materials and methods
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Study sites and eDNA collection
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Species-specific primer set development for Nanopore sequencing
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PCR and circularisation of PCR products for long-read amplicon sequencing
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Bioinformatics analysis
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Haplotype identification and sequence pair concatenation
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Statistical analyses
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Phylogenetic analyses
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Divergence time estimation
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Library preparation for quantitative fish eDNA metabarcoding
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Results
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Sequencing of 1,000 bp from eDNA samples and haplotyping
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Phylogenetic relationships and phylogeographic patterns
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Divergence times inferred from concatenated sequences
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Quantitative fish eDNA metabarcoding
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Discussion
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Requirements and practical feasibility of long-fragment eDNA sequencing
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A practical balance of resolution, labour, and financial cost
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High-resolution phylogeographic structure of B. oreas
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Broader applicability and limitations of long-fragment eDNA sequencing
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Acknowledgements
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References
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Additional information
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Conflict of interest
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Ethical statement
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Artificial Intelligence (AI) use
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Funding
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Author contributions
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Author ORCIDs
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Data availability
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Supplementary materials
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