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Article title
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Abstract
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Key words
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Introduction
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Materials and methods
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Samples collection
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Mock community preparation
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DNA isolation and amplification
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Illumina library preparation and sequencing
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Nanopore library preparation and sequencing
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Illumina data analysis
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Nanopore data analysis
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Extraction of V4-tags from Nanopore sequences
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Species-level classification and false positives assessment in the mock community
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Phylogenetic tree construction from Nanopore OTUs
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Statistical analyses
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Results
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Comparison of Illumina and Nanopore metabarcoding using a mock community
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Comparison of Illumina and Nanopore metabarcoding using environmental samples
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Diversity of novel OTUs obtained from Nanopore sequencing
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Discussion
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Generating high-quality OTUs through Nanopore sequencing and the BaNaNA pipeline
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Evaluating Nanopore OTUs versus Illumina ASVs
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Reconstructing ecological patterns from Nanopore and Illumina-based metabarcoding
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The importance of reference database in metabarcoding studies
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Longer is better: the benefits of Nanopore amplicons
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Conclusions
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Acknowledgements
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Additional information
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Conflict of interest
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Ethical statement
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Use of AI
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Funding
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Author contributions
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Author ORCIDs
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Data availability
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References
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Supplementary materials
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