Research Article
Metabarcoding and Metagenomics 8: e108649
https://doi.org/10.3897/mbmg.8.108649 (14 Mar 2024)
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  • ContentsContents
  • Article InfoArticle Info
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  • Article title
  • Abstract
  • Key words
  • Introduction
  • Method
    • Data
      • Samples
      • Dissimilarity array
      • List of OTUs
      • Annotated reads
    • Ideal OTUs and deviations
      • Ideal OTU
      • Composed OTU
      • OTU with noise
    • Method for identifying composed OTUs
    • Method for identifying OTUs with noise amongst single ones
    • Overview of the whole procedure
  • Results
    • Identification of composed OTUs in diatom samples
      • Analysis of the Teychan dataset
      • Link between OTU type and OTU size
      • Link with assignation
    • Identification of OTUs with noise in diatom samples
      • Training on the Teychan dataset
      • Results on the test set
      • Link between OTU size and OTU type
      • Link with assignation
    • Link between sample composition and environmental conditions
  • Discussion
    • Cliques
    • Single OTUs without noise
    • Single OTUs with noise
    • Composed OTUs
  • Conclusion
  • Acknowledgements
  • Additional information
    • Conflict of interest
    • Ethical statement
    • Funding
    • Author contributions
    • Author ORCIDs
    • Data availability
  • References
  • Supplementary material
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